RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 TRIP10Q15642 601 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 STXBP2Q15833 593 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 PDCD2Q16342 344 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-212ENST00000552491 DBN1Q16643 649 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 STXBP5Q5T5C0 1151 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 ATF7IP2Q5U623 682 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 ARMC3Q5W041 872 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 PDPK2PQ6A1A2 396 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 JADE1Q6IE81 842 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 CES3Q6UWW8 571 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 PACS1Q6VY07 963 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 TSHZ1Q6ZSZ6 1077 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 WDR75Q8IWA0 830 aaKnown RBP5.58□□□□□ -1.52
LIMA1-212ENST00000552491 PLD6Q8N2A8 252 aaKnown RBP5.58□□□□□ -1.52
LIMA1-212ENST00000552491 AGBL3Q8NEM8 1001 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 FLAD1Q8NFF5 587 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 B4GALNT2Q8NHY0 566 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 PPP1R14CQ8TAE6 165 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 MAPK15Q8TD08 544 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 ACTRT2Q8TDY3 377 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 NAT14Q8WUY8 206 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 ARNTL2Q8WYA1 636 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 NLRP4Q96MN2 994 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 LPIN3Q9BQK8 851 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 CENPKQ9BS16 269 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 TEX13BQ9BXU2 312 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 KLHL4Q9C0H6 718 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 VCX3BQ9H321 246 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 STN1Q9H668 368 aaKnown RBP5.58□□□□□ -1.52
LIMA1-212ENST00000552491 NRDE2Q9H7Z3 1164 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 VCX3AQ9NNX9 186 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 XPNPEP3Q9NQH7 507 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 ACSS2Q9NR19 701 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 UBAP1Q9NZ09 502 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 CLIC5Q9NZA1 410 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 TSPAN16Q9UKR8 245 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 APOBEC2Q9Y235 224 aaKnown RBP5.58□□□□□ -1.52
LIMA1-212ENST00000552491 NME7Q9Y5B8 376 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-212ENST00000552491 CAPN8A6NHC0 703 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 INO80B-WBP1J3KQ70 363 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 DCXO43602 365 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 GCATO75600 419 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 ALDH1A2O94788 518 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 ARIH2O95376 493 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 SERPINE1P05121 402 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 PYGLP06737 847 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 PTPRAP18433 802 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 NCF2P19878 526 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-212ENST00000552491 TPSB2P20231 275 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 CYP2F1P24903 491 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 MSX2P35548 267 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-212ENST00000552491 SERPINB9P50453 376 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 GTF2A2P52657 109 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 INHBCP55103 352 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 XIAPP98170 497 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 ITGA9Q13797 1035 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 TTLL12Q14166 644 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-212ENST00000552491 PDK3Q15120 406 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 STILQ15468 1287 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 TPSAB1Q15661 275 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 LY6KQ17RY6 165 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 TBC1D25Q3MII6 688 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 PABPC1LQ4VXU2 614 aaKnown RBP5.57□□□□□ -1.52
LIMA1-212ENST00000552491 SLC9B1Q4ZJI4 515 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 STEAP4Q687X5 459 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 KCNT2Q6UVM3 1135 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 OLFML1Q6UWY5 402 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 NAPRTQ6XQN6 538 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 TMC7Q7Z402 723 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 ARHGAP22Q7Z5H3 698 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 CMC1Q7Z7K0 106 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 KBTBD6Q86V97 674 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 TTC30AQ86WT1 665 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 MAP7D3Q8IWC1 876 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 SCUBE3Q8IX30 993 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 TNS4Q8IZW8 715 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 ZNF280CQ8ND82 737 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.57□□□□□ -1.52
LIMA1-212ENST00000552491 CLEC4CQ8WTT0 213 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 NMD3Q96D46 503 aaKnown RBP5.57□□□□□ -1.52
LIMA1-212ENST00000552491 OLFM3Q96PB7 478 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 GCNAQ96QF7 691 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 CEP41Q9BYV8 373 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 INO80BQ9C086 356 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-212ENST00000552491 PDGFDQ9GZP0 370 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-212ENST00000552491 CXCL16Q9H2A7 254 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 FZD8Q9H461 694 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 NRBP2Q9NSY0 501 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 ITGA11Q9UKX5 1188 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 INPP5FQ9Y2H2 1132 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 DOCK1Q14185 1865 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 C15orf38-AP3S2A0A0A6YYH1 394 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 IGKV6-21A0A0C4DH24 114 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 SPDYE16A6NNV3 312 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-212ENST00000552491 E9PBE3 544 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 ACKR2O00590 384 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 TXNDC9O14530 226 aa5.57□□□□□ -1.52
LIMA1-212ENST00000552491 CASQ2O14958 399 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-212ENST00000552491 PAPSS1O43252 624 aaPredicted RBP5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms