RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 ANO4Q32M45 955 aa17.69■□□□□ 0.42
LIG1-204ENST00000542460 HS1BP3Q53T59 392 aa17.69■□□□□ 0.42
LIG1-204ENST00000542460 KCNT1Q5JUK3 1230 aa17.69■□□□□ 0.42
LIG1-204ENST00000542460 RABGAP1LQ5R372 815 aa17.69■□□□□ 0.42
LIG1-204ENST00000542460 MPP7Q5T2T1 576 aa17.69■□□□□ 0.42
LIG1-204ENST00000542460 LRRC38Q5VT99 294 aa17.69■□□□□ 0.42
LIG1-204ENST00000542460 POLNQ7Z5Q5 900 aa17.69■□□□□ 0.42
LIG1-204ENST00000542460 C14orf80Q86SX3 495 aa17.69■□□□□ 0.42
LIG1-204ENST00000542460 RHOT1Q8IXI2 618 aa17.69■□□□□ 0.42
LIG1-204ENST00000542460 DDI1Q8WTU0 396 aa17.69■□□□□ 0.42
LIG1-204ENST00000542460 BBS2Q9BXC9 721 aa17.69■□□□□ 0.42
LIG1-204ENST00000542460 DHX35Q9H5Z1 703 aaKnown RBP17.69■□□□□ 0.42
LIG1-204ENST00000542460 TRMT1Q9NXH9 659 aaKnown RBP17.69■□□□□ 0.42
LIG1-204ENST00000542460 VANGL2Q9ULK5 521 aa17.69■□□□□ 0.42
LIG1-204ENST00000542460 HYOU1Q9Y4L1 999 aa17.69■□□□□ 0.42
LIG1-204ENST00000542460 SNX10Q9Y5X0 201 aa17.69■□□□□ 0.42
LIG1-204ENST00000542460 E9PAM4 449 aa17.68■□□□□ 0.42
LIG1-204ENST00000542460 NEDD8-MDP1E9PL57 170 aa17.68■□□□□ 0.42
LIG1-204ENST00000542460 HOXC11O43248 304 aaPredicted RBP17.68■□□□□ 0.42
LIG1-204ENST00000542460 SRGAP2O75044 1071 aa17.68■□□□□ 0.42
LIG1-204ENST00000542460 PENKP01210 267 aaPredicted RBP17.68■□□□□ 0.42
LIG1-204ENST00000542460 GGCXP38435 758 aa17.68■□□□□ 0.42
LIG1-204ENST00000542460 AMPD2Q01433 879 aa17.68■□□□□ 0.42
LIG1-204ENST00000542460 SMTNL2Q2TAL5 461 aa17.68■□□□□ 0.42
LIG1-204ENST00000542460 C5orf22Q49AR2 442 aa17.68■□□□□ 0.42
LIG1-204ENST00000542460 TTC39BQ5VTQ0 682 aaPredicted RBP17.68■□□□□ 0.42
LIG1-204ENST00000542460 FYB2Q5VWT5 728 aa17.68■□□□□ 0.42
LIG1-204ENST00000542460 TXNRD3NBQ6F5E7 133 aa17.68■□□□□ 0.42
LIG1-204ENST00000542460 ZNF683Q8IZ20 524 aa17.68■□□□□ 0.42
LIG1-204ENST00000542460 PYROXD2Q8N2H3 581 aa17.68■□□□□ 0.42
LIG1-204ENST00000542460 HJURPQ8NCD3 748 aaPredicted RBP17.68■□□□□ 0.42
LIG1-204ENST00000542460 TTC8Q8TAM2 541 aa17.68■□□□□ 0.42
LIG1-204ENST00000542460 HSPH1Q92598 858 aa17.68■□□□□ 0.42
LIG1-204ENST00000542460 TRIM44Q96DX7 344 aaPredicted RBP17.68■□□□□ 0.42
LIG1-204ENST00000542460 PRICKLE1Q96MT3 831 aaPredicted RBP17.68■□□□□ 0.42
LIG1-204ENST00000542460 RPRD1AQ96P16 312 aaPredicted RBP17.68■□□□□ 0.42
LIG1-204ENST00000542460 MAGEB5Q9BZ81 275 aa17.68■□□□□ 0.42
LIG1-204ENST00000542460 GPATCH2LQ9NWQ4 482 aa17.68■□□□□ 0.42
LIG1-204ENST00000542460 MUTYHQ9UIF7 546 aa17.68■□□□□ 0.42
LIG1-204ENST00000542460 CAPN6Q9Y6Q1 641 aa17.68■□□□□ 0.42
LIG1-204ENST00000542460 IGLV3-10A0A075B6K4 115 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 GOLGA6L9A6NEM1 432 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 DRGXA6NNA5 263 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 FAM72CH0Y354 149 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 TYRP14679 529 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 GLULP15104 373 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 GJA4P35212 333 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 ZNF135P52742 658 aaPredicted RBP17.67■□□□□ 0.42
LIG1-204ENST00000542460 DPYSL2Q16555 572 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 CA9Q16790 459 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 SLC44A4Q53GD3 710 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 FAM72AQ5TYM5 149 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 FAM72DQ6L9T8 149 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 FAM72BQ86X60 149 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 CCAR2Q8N163 923 aaKnown RBP17.67■□□□□ 0.42
LIG1-204ENST00000542460 UBE2Q2Q8WVN8 375 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 BHMTQ93088 406 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 IGSF8Q969P0 613 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 MYEOVQ96EZ4 313 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 ALS2CR12Q96Q35 445 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 EPAS1Q99814 870 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 C8orf33Q9H7E9 229 aaPredicted RBP17.67■□□□□ 0.42
LIG1-204ENST00000542460 HEBP1Q9NRV9 189 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.67■□□□□ 0.42
LIG1-204ENST00000542460 PPARGC1AQ9UBK2 798 aaKnown RBP17.67■□□□□ 0.42
LIG1-204ENST00000542460 WNT16Q9UBV4 365 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 KIF26AQ9ULI4 1882 aaPredicted RBP17.67■□□□□ 0.42
LIG1-204ENST00000542460 PSTPIP1O43586 416 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 CREB3O43889 395 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 TBL1XO60907 577 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 LRIG2O94898 1065 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 HTR7P34969 479 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 GJC1P36383 396 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 SGSHP51688 502 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 RPS24P62847 133 aaKnown RBP17.67■□□□□ 0.42
LIG1-204ENST00000542460 SEMA3BQ13214 749 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 ATP13A4Q4VNC1 1196 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 MANEALQ5VSG8 457 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 PEX26Q7Z412 305 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 CFAP52Q8N1V2 620 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 TRIM58Q8NG06 486 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 CD101Q93033 1021 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 P2RY11Q96G91 374 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 XPO6Q96QU8 1125 aaKnown RBP17.67■□□□□ 0.42
LIG1-204ENST00000542460 PLK2Q9NYY3 685 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 AMFRQ9UKV5 643 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.67■□□□□ 0.42
LIG1-204ENST00000542460 PIAS3Q9Y6X2 628 aa17.67■□□□□ 0.42
LIG1-204ENST00000542460 TNNT1P13805 278 aa17.66■□□□□ 0.42
LIG1-204ENST00000542460 HOXD9P28356 352 aaPredicted RBP17.66■□□□□ 0.42
LIG1-204ENST00000542460 GAB4Q2WGN9 574 aa17.66■□□□□ 0.42
LIG1-204ENST00000542460 PPP6R3Q5H9R7 873 aaPredicted RBP17.66■□□□□ 0.42
LIG1-204ENST00000542460 ZFYVE27Q5T4F4 411 aa17.66■□□□□ 0.42
LIG1-204ENST00000542460 ARTNQ5T4W7 220 aa17.66■□□□□ 0.42
LIG1-204ENST00000542460 RNF43Q68DV7 783 aa17.66■□□□□ 0.42
LIG1-204ENST00000542460 NT5DC3Q86UY8 548 aa17.66■□□□□ 0.42
LIG1-204ENST00000542460 RALGPS2Q86X27 583 aaPredicted RBP17.66■□□□□ 0.42
LIG1-204ENST00000542460 MAP7D3Q8IWC1 876 aa17.66■□□□□ 0.42
LIG1-204ENST00000542460 KCTD6Q8NC69 237 aa17.66■□□□□ 0.42
LIG1-204ENST00000542460 TBC1D31Q96DN5 1066 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms