RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 SLC35G2Q8TBE7 412 aa9.71□□□□□ -0.86
CLIP1-214ENST00000540539 CEP170P1Q96L14 293 aa9.71□□□□□ -0.86
CLIP1-214ENST00000540539 TRIM56Q9BRZ2 755 aaKnown RBP9.71□□□□□ -0.86
CLIP1-214ENST00000540539 TRIM9Q9C026 710 aa9.71□□□□□ -0.86
CLIP1-214ENST00000540539 VPS11Q9H270 941 aa9.71□□□□□ -0.86
CLIP1-214ENST00000540539 STN1Q9H668 368 aaKnown RBP9.71□□□□□ -0.86
CLIP1-214ENST00000540539 VPS37BQ9H9H4 285 aa9.71□□□□□ -0.86
CLIP1-214ENST00000540539 PIM2Q9P1W9 311 aa9.71□□□□□ -0.86
CLIP1-214ENST00000540539 DNAJC12Q9UKB3 198 aa9.71□□□□□ -0.86
CLIP1-214ENST00000540539 POLIQ9UNA4 740 aa9.71□□□□□ -0.86
CLIP1-214ENST00000540539 ARAP2Q8WZ64 1704 aa9.71□□□□□ -0.86
CLIP1-214ENST00000540539 ZNF804BA4D1E1 1349 aa9.71□□□□□ -0.86
CLIP1-214ENST00000540539 MIF4GDA9UHW6 222 aaKnown RBP9.7□□□□□ -0.86
CLIP1-214ENST00000540539 NDUFA2O43678 99 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 GCATO75600 419 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 PRDM1O75626 825 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 ITIH2P19823 946 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 IVDP26440 423 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 ALDH18A1P54886 795 aaKnown RBP9.7□□□□□ -0.86
CLIP1-214ENST00000540539 TMPRSS15P98073 1019 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 ZNF846Q147U1 533 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 SNX17Q15036 470 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 C6orf10Q5SRN2 563 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 KRT80Q6KB66 452 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 USP37Q86T82 979 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 TDRPQ86YL5 185 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 TMEM126BQ8IUX1 230 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 NLGN2Q8NFZ4 835 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 TRIM63Q969Q1 353 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 SH3KBP1Q96B97 665 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 TMEM79Q9BSE2 394 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 ZSCAN5AQ9BUG6 496 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 NPLQ9BXD5 320 aaPredicted RBP9.7□□□□□ -0.86
CLIP1-214ENST00000540539 MUC3BQ9H195 1237 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 IFT22Q9H7X7 185 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 KANSL2Q9H9L4 492 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 CYP4F11Q9HBI6 524 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 POLE4Q9NR33 117 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 MAP3K20Q9NYL2 800 aaKnown RBP9.7□□□□□ -0.86
CLIP1-214ENST00000540539 SLC17A7Q9P2U7 560 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 VPS4AQ9UN37 437 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 ZHX2Q9Y6X8 837 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 NCANO14594 1321 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 A0A087WXM4 84 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 A0A1W2PQ72 361 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 C7orf72A4D263 438 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 AREL1O15033 823 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 NMT2O60551 498 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 USP12O75317 370 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 BCL10O95999 233 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 EGFRP00533 1210 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 ATF6P18850 670 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 ARNTP27540 789 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 SERPINB1P30740 379 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 CASP3P42574 277 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 CLCNKBP51801 687 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 AP2S1P53680 142 aaPredicted RBP9.7□□□□□ -0.86
CLIP1-214ENST00000540539 MAPK10P53779 464 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 PMS2P3Q13401 168 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 RAB39AQ14964 217 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 CDK10Q15131 360 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 DLG2Q15700 870 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 SDE2Q6IQ49 451 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 REXO1Q8N1G1 1221 aaKnown RBP9.7□□□□□ -0.86
CLIP1-214ENST00000540539 SLC22A8Q8TCC7 542 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 TCP10LQ8TDR4 215 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 JPH3Q8WXH2 748 aaPredicted RBP9.7□□□□□ -0.86
CLIP1-214ENST00000540539 RFFLQ8WZ73 363 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 SH3YL1Q96HL8 342 aaPredicted RBP9.7□□□□□ -0.86
CLIP1-214ENST00000540539 REXO5Q96IC2 774 aaKnown RBP9.7□□□□□ -0.86
CLIP1-214ENST00000540539 SNX18Q96RF0 628 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 MCMBPQ9BTE3 642 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 PUS7LQ9H0K6 701 aaKnown RBP9.7□□□□□ -0.86
CLIP1-214ENST00000540539 VPS33BQ9H267 617 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 COPS7BQ9H9Q2 264 aaPredicted RBP9.7□□□□□ -0.86
CLIP1-214ENST00000540539 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.7□□□□□ -0.86
CLIP1-214ENST00000540539 ACP6Q9NPH0 428 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 KCNK4Q9NYG8 393 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 SERPINA10Q9UK55 444 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 EIF3LQ9Y262 564 aaKnown RBP9.7□□□□□ -0.86
CLIP1-214ENST00000540539 TESMINQ9Y4I5 508 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 LTBP1Q14766 1721 aa9.7□□□□□ -0.86
CLIP1-214ENST00000540539 A0A0G2JMP0 313 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 A0A0X1KG70 313 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 LINC01387J3KSC0 135 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 OR5F1O95221 314 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 PROCP04070 461 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 ABHD2P08910 425 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 MCF2P10911 925 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 GFAPP14136 432 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 ITGAXP20702 1163 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 GARTP22102 1010 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 EPHA3P29320 983 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 JAM2P57087 298 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 SIX1Q15475 284 aaPredicted RBP9.69□□□□□ -0.86
CLIP1-214ENST00000540539 NPY5RQ15761 445 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 TBCCQ15814 346 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 CCNG2Q16589 344 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 ABCB5Q2M3G0 1257 aa9.69□□□□□ -0.86
CLIP1-214ENST00000540539 RSBN1Q5VWQ0 802 aaPredicted RBP9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms