RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 CA8P35219 290 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 ATP1A4Q13733 1029 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 SCARA3Q6AZY7 606 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 FAM160B2Q86V87 743 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 MCF2L2Q86YR7 1114 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 TDRD5Q8NAT2 981 aaKnown RBP13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 MARK4Q96L34 752 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 FERMT1Q9BQL6 677 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 TMEM216Q9P0N5 145 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 BARX2Q9UMQ3 279 aaPredicted RBP13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 COL24A1Q17RW2 1714 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 AMHP03971 560 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 HMGCRP04035 888 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 MCF2P10911 925 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 SAT1P21673 171 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 GRIA1P42261 906 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 CDK9P50750 372 aaKnown RBP13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 SLC5A3P53794 718 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 SEPT6Q14141 434 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 OR6B2Q6IFH4 312 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 LRRC43Q8N309 656 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 WDTC1Q8N5D0 677 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 ABHD8Q96I13 439 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 ZNF512Q96ME7 567 aaPredicted RBP13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 OR52B2Q96RD2 323 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 OXCT2Q9BYC2 517 aaPredicted RBP13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 WDR41Q9HAD4 459 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 RAVER2Q9HCJ3 691 aaKnown RBP13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 COPG2Q9UBF2 871 aa13.18□□□□□ -0.3
SFSWAP-209ENST00000540469 SH3PXD2BA1X283 911 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 CBFA2T3O75081 653 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 TRUB2O95900 331 aaKnown RBP13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 OCM2P0CE71 109 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 OCMP0CE72 109 aaPredicted RBP13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 CNTFP26441 200 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 EPHA3P29320 983 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 GARSP41250 739 aaKnown RBP13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 CD97P48960 835 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 OSTNP61366 133 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 BBS5Q8N3I7 341 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 TMX2Q9Y320 296 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 HMX2A2RU54 273 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 RGSL1A5PLK6 1076 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 MED7O43513 233 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 PDGFRAP16234 1089 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 ZNF23P17027 643 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 SH3PXD2AQ5TCZ1 1133 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 CMC1Q7Z7K0 106 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 LILRA2Q8N149 483 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 ZNF786Q8N393 782 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 LRRC39Q96DD0 335 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 CPXM1Q96SM3 734 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 NTPCRQ9BSD7 190 aaKnown RBP13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 TUT1Q9H6E5 874 aaKnown RBP13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 TBCCD1Q9NVR7 557 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 MAGED2Q9UNF1 606 aaPredicted RBP13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 WDR37Q9Y2I8 494 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 UBIAD1Q9Y5Z9 338 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 CLRN2A0PK11 232 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 FAM159BA6NKW6 160 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 FAM189A1O60320 539 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 H6PDO95479 791 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 RAP1GAPP47736 663 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 APOFQ13790 326 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 C15orf59Q2T9L4 293 aaPredicted RBP13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 CRY2Q49AN0 593 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 FASTKD5Q7L8L6 764 aaKnown RBP13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 TAS1R3Q7RTX0 852 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 SP8Q8IXZ3 490 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 DDHD1Q8NEL9 900 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 ATP6V1E2Q96A05 226 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 SORT1Q99523 831 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 SDCBP2Q9H190 292 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 DHX35Q9H5Z1 703 aaKnown RBP13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 RIMS3Q9UJD0 308 aa13.17□□□□□ -0.3
SFSWAP-209ENST00000540469 TCRBV5S1A1TA0A578 114 aa13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 M0QYV0 167 aa13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 NOL3O60936 208 aaKnown RBP13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 PTPN1P18031 435 aaKnown RBP13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 VARSP26640 1264 aaKnown RBP13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 ADORA2AP29274 412 aa13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 TMED10P49755 219 aaKnown RBP13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 BORAQ6PGQ7 559 aa13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 TRIM50Q86XT4 487 aa13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 CMASQ8NFW8 434 aaPredicted RBP13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 IDI2Q9BXS1 227 aa13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 CDH19Q9H159 772 aa13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 COQ10BQ9H8M1 238 aa13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 TUBGCP4Q9UGJ1 667 aa13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 EMCNQ9ULC0 261 aa13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 PCDHA11Q9Y5I1 949 aa13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 ALDOAP04075 364 aaKnown RBP13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 P4HA1P13674 534 aa13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 PRKCEQ02156 737 aa13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 PTK2BQ14289 1009 aa13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 SLC27A3Q5K4L6 730 aa13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 CES3Q6UWW8 571 aa13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 TMEM110Q86TL2 294 aa13.16□□□□□ -0.3
SFSWAP-209ENST00000540469 GRIN3AQ8TCU5 1115 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms