RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 DUSP7Q16829 419 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 PGS1Q32NB8 556 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 NHSL2Q5HYW2 709 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 KRT39Q6A163 491 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 HERC6Q8IVU3 1022 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 RAVER1Q8IY67 606 aaKnown RBP12.74□□□□□ -0.37
USP3-203ENST00000538686 KATNAL2Q8IYT4 538 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 Q8N9G6 341 aaPredicted RBP12.74□□□□□ -0.37
USP3-203ENST00000538686 MFSD2AQ8NA29 543 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 FEM1CQ96JP0 617 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 BTBD6Q96KE9 485 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 UQCC2Q9BRT2 126 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 TMEM121Q9BTD3 319 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 ISCA1Q9BUE6 129 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 SLC13A1Q9BZW2 595 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 CD320Q9NPF0 282 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.74□□□□□ -0.37
USP3-203ENST00000538686 NPAP1Q9NZP6 1156 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 GMIPQ9P107 970 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 ENPP5Q9UJA9 477 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 GPSM3Q9Y4H4 160 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 PCDHB13Q9Y5F0 798 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 ST14Q9Y5Y6 855 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 ASTN1O14525 1302 aa12.74□□□□□ -0.37
USP3-203ENST00000538686 H7C0C1 242 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 hCG_1984214I3L0E3 225 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 NOP56O00567 594 aaKnown RBP12.73□□□□□ -0.37
USP3-203ENST00000538686 TNPO2O14787 897 aaKnown RBP12.73□□□□□ -0.37
USP3-203ENST00000538686 RFPL2O75678 378 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 RNASEH2AO75792 299 aaKnown RBP12.73□□□□□ -0.37
USP3-203ENST00000538686 CYP7A1P22680 504 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 CCNCP24863 283 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 PTGS2P35354 604 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 ZNF135P52742 658 aaPredicted RBP12.73□□□□□ -0.37
USP3-203ENST00000538686 ANGEL2Q5VTE6 544 aaKnown RBP12.73□□□□□ -0.37
USP3-203ENST00000538686 FAM122CQ6P4D5 195 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 MAMDC4Q6UXC1 1216 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 KCTD8Q6ZWB6 473 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 LURAP1LQ8IV03 231 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 PPIL6Q8IXY8 311 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 PGAM4Q8N0Y7 254 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 DCLK2Q8N568 766 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 GALNT6Q8NCL4 622 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 SLC29A1Q99808 456 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 APOL6Q9BWW8 343 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 CALN1Q9BXU9 219 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 NOL6Q9H6R4 1146 aaKnown RBP12.73□□□□□ -0.37
USP3-203ENST00000538686 MKNK2Q9HBH9 465 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 XPNPEP1Q9NQW7 623 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 LRP2BPQ9P2M1 347 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 XPO7Q9UIA9 1087 aaKnown RBP12.73□□□□□ -0.37
USP3-203ENST00000538686 ZNF229Q9UJW7 825 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 WBP11Q9Y2W2 641 aaKnown RBP12.73□□□□□ -0.37
USP3-203ENST00000538686 PCDHB4Q9Y5E5 795 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 MROH5Q6ZUA9 1318 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 SCN4AP35499 1836 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 ZW10O43264 779 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 SNX2O60749 519 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 GSNP06396 782 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 SNRPAP09012 282 aaKnown RBP12.73□□□□□ -0.37
USP3-203ENST00000538686 RALBP11234 206 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 PTPN1P18031 435 aaKnown RBP12.73□□□□□ -0.37
USP3-203ENST00000538686 FGFR2P21802 821 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 CES1P23141 567 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 ARL1P40616 181 aaPredicted RBP12.73□□□□□ -0.37
USP3-203ENST00000538686 CASP4P49662 377 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 B2MP61769 119 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 STXBP5Q5T5C0 1151 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 ZCCHC8Q6NZY4 707 aaKnown RBP12.73□□□□□ -0.37
USP3-203ENST00000538686 ERAP2Q6P179 960 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 RHOT1Q8IXI2 618 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 PNMA1Q8ND90 353 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 BRSK1Q8TDC3 778 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 LRRC59Q96AG4 307 aaKnown RBP12.73□□□□□ -0.37
USP3-203ENST00000538686 UHRF1Q96T88 793 aaPredicted RBP12.73□□□□□ -0.37
USP3-203ENST00000538686 CLSTN3Q9BQT9 956 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 HERPUD2Q9BSE4 406 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 MECRQ9BV79 373 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 ADAMTS10Q9H324 1103 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 TXNDC16Q9P2K2 825 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 MAD2L2Q9UI95 211 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 ANAPC7Q9UJX3 599 aa12.73□□□□□ -0.37
USP3-203ENST00000538686 SFI1A8K8P3 1242 aa12.72□□□□□ -0.37
USP3-203ENST00000538686 FAM25EA8MYX2 175 aa12.72□□□□□ -0.37
USP3-203ENST00000538686 SHOXO15266 292 aa12.72□□□□□ -0.37
USP3-203ENST00000538686 SEC14L2O76054 403 aa12.72□□□□□ -0.37
USP3-203ENST00000538686 XRCC1P18887 633 aaPredicted RBP12.72□□□□□ -0.37
USP3-203ENST00000538686 IDH3AP50213 366 aa12.72□□□□□ -0.37
USP3-203ENST00000538686 KCNQ4P56696 695 aa12.72□□□□□ -0.37
USP3-203ENST00000538686 TRIM32Q13049 653 aa12.72□□□□□ -0.37
USP3-203ENST00000538686 RFTN1Q14699 578 aaPredicted RBP12.72□□□□□ -0.37
USP3-203ENST00000538686 CDK10Q15131 360 aa12.72□□□□□ -0.37
USP3-203ENST00000538686 LLGL1Q15334 1064 aa12.72□□□□□ -0.37
USP3-203ENST00000538686 ECM1Q16610 540 aa12.72□□□□□ -0.37
USP3-203ENST00000538686 CYP4A22Q5TCH4 519 aa12.72□□□□□ -0.37
USP3-203ENST00000538686 NEK5Q6P3R8 708 aa12.72□□□□□ -0.37
USP3-203ENST00000538686 ABRAXAS1Q6UWZ7 409 aa12.72□□□□□ -0.37
USP3-203ENST00000538686 SLC26A11Q86WA9 606 aa12.72□□□□□ -0.37
USP3-203ENST00000538686 CPNE8Q86YQ8 564 aa12.72□□□□□ -0.37
USP3-203ENST00000538686 ANKFN1Q8N957 763 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms