RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 CDH18Q13634 790 aa21.36■■□□□ 1.01
VPS28-206ENST00000526734 RSPO4Q2I0M5 234 aaPredicted RBP21.36■■□□□ 1.01
VPS28-206ENST00000526734 TRIM72Q6ZMU5 477 aa21.36■■□□□ 1.01
VPS28-206ENST00000526734 CYP2U1Q7Z449 544 aa21.36■■□□□ 1.01
VPS28-206ENST00000526734 AOPEPQ8N6M6 819 aa21.36■■□□□ 1.01
VPS28-206ENST00000526734 RNF34Q969K3 372 aa21.36■■□□□ 1.01
VPS28-206ENST00000526734 PCMTD1Q96MG8 357 aaPredicted RBP21.36■■□□□ 1.01
VPS28-206ENST00000526734 RTKNQ9BST9 563 aa21.36■■□□□ 1.01
VPS28-206ENST00000526734 NUCKS1Q9H1E3 243 aaKnown RBP21.36■■□□□ 1.01
VPS28-206ENST00000526734 NOCTQ9UK39 431 aaKnown RBP21.36■■□□□ 1.01
VPS28-206ENST00000526734 DYNC1LI1Q9Y6G9 523 aaKnown RBP21.36■■□□□ 1.01
VPS28-206ENST00000526734 MYO18AQ92614 2054 aaKnown RBP21.35■■□□□ 1.01
VPS28-206ENST00000526734 F5H5T6 163 aa21.35■■□□□ 1.01
VPS28-206ENST00000526734 GFPT2O94808 682 aa21.35■■□□□ 1.01
VPS28-206ENST00000526734 DLDP09622 509 aaKnown RBP21.35■■□□□ 1.01
VPS28-206ENST00000526734 POLR2EP19388 210 aaKnown RBP21.35■■□□□ 1.01
VPS28-206ENST00000526734 PTMSP20962 102 aa21.35■■□□□ 1.01
VPS28-206ENST00000526734 TACR2P21452 398 aa21.35■■□□□ 1.01
VPS28-206ENST00000526734 NOMO3P69849 1222 aa21.35■■□□□ 1.01
VPS28-206ENST00000526734 CDR2Q01850 454 aa21.35■■□□□ 1.01
VPS28-206ENST00000526734 CREB5Q02930 508 aa21.35■■□□□ 1.01
VPS28-206ENST00000526734 UBXN1Q04323 297 aa21.35■■□□□ 1.01
VPS28-206ENST00000526734 FUT11Q495W5 492 aa21.35■■□□□ 1.01
VPS28-206ENST00000526734 RABGAP1LQ5R372 815 aa21.35■■□□□ 1.01
VPS28-206ENST00000526734 ACBD5Q5T8D3 534 aaPredicted RBP21.35■■□□□ 1.01
VPS28-206ENST00000526734 TAF3Q5VWG9 929 aa21.35■■□□□ 1.01
VPS28-206ENST00000526734 TMEM215Q68D42 235 aa21.35■■□□□ 1.01
VPS28-206ENST00000526734 MBLAC2Q68D91 279 aa21.35■■□□□ 1.01
VPS28-206ENST00000526734 CAVIN1Q6NZI2 390 aaKnown RBP21.35■■□□□ 1.01
VPS28-206ENST00000526734 ADIPOR2Q86V24 386 aa21.35■■□□□ 1.01
VPS28-206ENST00000526734 RLN3Q8WXF3 142 aa21.35■■□□□ 1.01
VPS28-206ENST00000526734 MRGPRX1Q96LB2 322 aa21.35■■□□□ 1.01
VPS28-206ENST00000526734 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP21.35■■□□□ 1.01
VPS28-206ENST00000526734 STIM2Q9P246 746 aa21.35■■□□□ 1.01
VPS28-206ENST00000526734 RAD54BQ9Y620 910 aa21.35■■□□□ 1.01
VPS28-206ENST00000526734 PLXND1Q9Y4D7 1925 aa21.34■■□□□ 1.01
VPS28-206ENST00000526734 WASH3PC4AMC7 463 aa21.34■■□□□ 1.01
VPS28-206ENST00000526734 GRAP2O75791 330 aa21.34■■□□□ 1.01
VPS28-206ENST00000526734 LUC7L3O95232 432 aaKnown RBP21.34■■□□□ 1.01
VPS28-206ENST00000526734 MOCS3O95396 460 aa21.34■■□□□ 1.01
VPS28-206ENST00000526734 CAVIN2O95810 425 aa21.34■■□□□ 1.01
VPS28-206ENST00000526734 F9P00740 461 aa21.34■■□□□ 1.01
VPS28-206ENST00000526734 MMEP08473 750 aa21.34■■□□□ 1.01
VPS28-206ENST00000526734 HOXD12P35452 270 aa21.34■■□□□ 1.01
VPS28-206ENST00000526734 DHPSP49366 369 aaPredicted RBP21.34■■□□□ 1.01
VPS28-206ENST00000526734 KLK7P49862 253 aa21.34■■□□□ 1.01
VPS28-206ENST00000526734 LIMK1P53667 647 aa21.34■■□□□ 1.01
VPS28-206ENST00000526734 OXCT1P55809 520 aa21.34■■□□□ 1.01
VPS28-206ENST00000526734 RPS24P62847 133 aaKnown RBP21.34■■□□□ 1.01
VPS28-206ENST00000526734 PITX1P78337 314 aaPredicted RBP21.34■■□□□ 1.01
VPS28-206ENST00000526734 ANO6Q4KMQ2 910 aa21.34■■□□□ 1.01
VPS28-206ENST00000526734 AASDHQ4L235 1098 aaPredicted RBP21.34■■□□□ 1.01
VPS28-206ENST00000526734 FNDC3BQ53EP0 1204 aaKnown RBP21.34■■□□□ 1.01
VPS28-206ENST00000526734 BRMS1LQ5PSV4 323 aa21.34■■□□□ 1.01
VPS28-206ENST00000526734 RAP1GAP2Q684P5 730 aa21.34■■□□□ 1.01
VPS28-206ENST00000526734 ARCQ7LC44 396 aa21.34■■□□□ 1.01
VPS28-206ENST00000526734 LGI2Q8N0V4 545 aa21.34■■□□□ 1.01
VPS28-206ENST00000526734 KDM1BQ8NB78 822 aa21.34■■□□□ 1.01
VPS28-206ENST00000526734 PGAP3Q96FM1 320 aaPredicted RBP21.34■■□□□ 1.01
VPS28-206ENST00000526734 HSD3B7Q9H2F3 369 aa21.34■■□□□ 1.01
VPS28-206ENST00000526734 PRDM16Q9HAZ2 1276 aa21.34■■□□□ 1.01
VPS28-206ENST00000526734 NLRC4Q9NPP4 1024 aa21.34■■□□□ 1.01
VPS28-206ENST00000526734 SPTBN4Q9H254 2564 aa21.34■■□□□ 1.01
VPS28-206ENST00000526734 CEP250Q9BV73 2442 aa21.33■■□□□ 1.01
VPS28-206ENST00000526734 EPHX1P07099 455 aa21.33■■□□□ 1.01
VPS28-206ENST00000526734 SLC12A1Q13621 1099 aa21.33■■□□□ 1.01
VPS28-206ENST00000526734 FAM102AQ5T9C2 384 aaPredicted RBP21.33■■□□□ 1.01
VPS28-206ENST00000526734 KIAA1324Q6UXG2 1013 aaKnown RBP21.33■■□□□ 1.01
VPS28-206ENST00000526734 SND1Q7KZF4 910 aaKnown RBP eCLIP21.33■■□□□ 1.01
VPS28-206ENST00000526734 APTXQ7Z2E3 356 aaKnown RBP21.33■■□□□ 1.01
VPS28-206ENST00000526734 XYLT1Q86Y38 959 aa21.33■■□□□ 1.01
VPS28-206ENST00000526734 CARNMT1Q8N4J0 409 aa21.33■■□□□ 1.01
VPS28-206ENST00000526734 NT5C3BQ969T7 300 aa21.33■■□□□ 1.01
VPS28-206ENST00000526734 TTC17Q96AE7 1141 aa21.33■■□□□ 1.01
VPS28-206ENST00000526734 LMLNQ96KR4 655 aa21.33■■□□□ 1.01
VPS28-206ENST00000526734 NPY6RQ99463 290 aa21.33■■□□□ 1.01
VPS28-206ENST00000526734 PRMT1Q99873 361 aaKnown RBP21.33■■□□□ 1.01
VPS28-206ENST00000526734 TMEM245Q9H330 911 aa21.33■■□□□ 1.01
VPS28-206ENST00000526734 KIAA1522Q9P206 1035 aaPredicted RBP21.33■■□□□ 1.01
VPS28-206ENST00000526734 XPO7Q9UIA9 1087 aaKnown RBP21.33■■□□□ 1.01
VPS28-206ENST00000526734 MBD1Q9UIS9 605 aaPredicted RBP21.33■■□□□ 1.01
VPS28-206ENST00000526734 WDR87Q6ZQQ6 2873 aa21.32■■□□□ 1
VPS28-206ENST00000526734 IGHV1OR15-9A0A0B4J2B8 117 aa21.32■■□□□ 1
VPS28-206ENST00000526734 LOC105378220A0A1B0GUY1 285 aaPredicted RBP21.32■■□□□ 1
VPS28-206ENST00000526734 A0A1B0GVM2 712 aa21.32■■□□□ 1
VPS28-206ENST00000526734 TCAF2A6NFQ2 919 aa21.32■■□□□ 1
VPS28-206ENST00000526734 H0Y626 953 aa21.32■■□□□ 1
VPS28-206ENST00000526734 M0QYT0 321 aa21.32■■□□□ 1
VPS28-206ENST00000526734 SLC30A4O14863 429 aa21.32■■□□□ 1
VPS28-206ENST00000526734 EPHB6O15197 1021 aa21.32■■□□□ 1
VPS28-206ENST00000526734 CYP1A1P04798 512 aaPredicted RBP21.32■■□□□ 1
VPS28-206ENST00000526734 CCDC172P0C7W6 258 aa21.32■■□□□ 1
VPS28-206ENST00000526734 C7P10643 843 aa21.32■■□□□ 1
VPS28-206ENST00000526734 PRKCHP24723 683 aa21.32■■□□□ 1
VPS28-206ENST00000526734 CD70P32970 193 aa21.32■■□□□ 1
VPS28-206ENST00000526734 ST8SIA6P61647 398 aa21.32■■□□□ 1
VPS28-206ENST00000526734 RPL6Q02878 288 aaKnown RBP21.32■■□□□ 1
VPS28-206ENST00000526734 LMAN2Q12907 356 aa21.32■■□□□ 1
VPS28-206ENST00000526734 NME3Q13232 169 aa21.32■■□□□ 1
VPS28-206ENST00000526734 CAMK2GQ13555 558 aaPredicted RBP21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms