RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 DMGDHQ9UI17 866 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 ABCG2Q9UNQ0 655 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 MFHAS1Q9Y4C4 1052 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 PRMT3O60678 531 aa11.46□□□□□ -0.57
LIMCH1-217ENST00000512946 ASMTLO95671 621 aa11.46□□□□□ -0.57
LIMCH1-217ENST00000512946 TIE1P35590 1138 aa11.46□□□□□ -0.57
LIMCH1-217ENST00000512946 PEX5LQ8IYB4 626 aa11.46□□□□□ -0.57
LIMCH1-217ENST00000512946 POLD4Q9HCU8 107 aa11.46□□□□□ -0.57
LIMCH1-217ENST00000512946 MED11Q9P086 117 aa11.46□□□□□ -0.57
LIMCH1-217ENST00000512946 SHANK2Q9UPX8 1470 aa11.46□□□□□ -0.57
LIMCH1-217ENST00000512946 LSM8O95777 96 aaKnown RBP11.46□□□□□ -0.57
LIMCH1-217ENST00000512946 PROCP04070 461 aa11.46□□□□□ -0.57
LIMCH1-217ENST00000512946 GRK4P32298 578 aa11.46□□□□□ -0.57
LIMCH1-217ENST00000512946 RPL3P39023 403 aaKnown RBP11.46□□□□□ -0.57
LIMCH1-217ENST00000512946 ZNF135P52742 658 aaPredicted RBP11.46□□□□□ -0.57
LIMCH1-217ENST00000512946 SQLEQ14534 574 aa11.46□□□□□ -0.57
LIMCH1-217ENST00000512946 WDR72Q3MJ13 1102 aa11.46□□□□□ -0.57
LIMCH1-217ENST00000512946 GALNTL6Q49A17 601 aa11.46□□□□□ -0.57
LIMCH1-217ENST00000512946 ZRANB3Q5FWF4 1079 aa11.46□□□□□ -0.57
LIMCH1-217ENST00000512946 SPANXN3Q5MJ09 141 aa11.46□□□□□ -0.57
LIMCH1-217ENST00000512946 FAM220AQ7Z4H9 259 aa11.46□□□□□ -0.57
LIMCH1-217ENST00000512946 CHSY1Q86X52 802 aa11.46□□□□□ -0.57
LIMCH1-217ENST00000512946 GALNT6Q8NCL4 622 aa11.46□□□□□ -0.57
LIMCH1-217ENST00000512946 ACMSDQ8TDX5 336 aa11.46□□□□□ -0.57
LIMCH1-217ENST00000512946 VCPIP1Q96JH7 1222 aa11.46□□□□□ -0.57
LIMCH1-217ENST00000512946 CCSER2Q9H7U1 834 aa11.46□□□□□ -0.57
LIMCH1-217ENST00000512946 MTF2Q9Y483 593 aaPredicted RBP11.46□□□□□ -0.57
LIMCH1-217ENST00000512946 AP4B1Q9Y6B7 739 aa11.46□□□□□ -0.57
LIMCH1-217ENST00000512946 CLASP1Q7Z460 1538 aa11.46□□□□□ -0.57
LIMCH1-217ENST00000512946 ERVV-1B6SEH8 477 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 NPY2RP49146 381 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 S100A12P80511 92 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 IL18R1Q13478 541 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 HECTD3Q5T447 861 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 TWF2Q6IBS0 349 aaKnown RBP11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 SULF1Q8IWU6 871 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 LRRC71Q8N4P6 559 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 RMDN3Q96TC7 470 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 TMEM47Q9BQJ4 181 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 UBQLN1Q9UMX0 589 aaKnown RBP11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 TCP10L2B9ZVM9 353 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 TSPAN4O14817 238 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 AKAP8O43823 692 aaKnown RBP11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 CHRNGP07510 517 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 SERPINF2P08697 491 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 ABHD2P08910 425 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 ARL4DP49703 201 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 FOLH1Q04609 750 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 CAMK2GQ13555 558 aaPredicted RBP11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 PRKG1Q13976 671 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 DGCR6Q14129 220 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 TCEAL5Q5H9L2 206 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 C11orf74Q86VG3 221 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 ZNF540Q8NDQ6 660 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 PIWIL2Q8TC59 973 aaKnown RBP11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 CPA5Q8WXQ8 436 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 KIF12Q96FN5 646 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 GREM2Q9H772 168 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 CHMP1AQ9HD42 196 aaPredicted RBP11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 SPAG4Q9NPE6 437 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 RAD18Q9NS91 495 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 PTGFRNQ9P2B2 879 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 ZNF112Q9UJU3 913 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 PSMD13Q9UNM6 376 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 GIT1Q9Y2X7 761 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 PCDHA3Q9Y5H8 950 aa11.46□□□□□ -0.58
LIMCH1-217ENST00000512946 ASB14A6NK59 587 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 EPN2O95208 641 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 ITGALP20701 1170 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 SOX11P35716 441 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 PNPLA4P41247 253 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 SNRNP35Q16560 246 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 XKR3Q5GH77 459 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 GPR107Q5VW38 600 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 TMEM110Q86TL2 294 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 SLCO6A1Q86UG4 719 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 BHLHE22Q8NFJ8 381 aaPredicted RBP11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 TCP10LQ8TDR4 215 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 DQX1Q8TE96 717 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 WRNIP1Q96S55 665 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 TBC1D13Q9NVG8 400 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 UPB1Q9UBR1 384 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 LEF1Q9UJU2 399 aaPredicted RBP11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 ITSN2Q9NZM3 1697 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 UMODL1Q5DID0 1318 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 TCOF1Q13428 1488 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 TRIM64CA6NLI5 447 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 LCP1P13796 627 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 HPGDP15428 266 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 ERCC2P18074 760 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 ERP29P30040 261 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 OMPP47874 163 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 CD151P48509 253 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 MRPS22P82650 360 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 C1orf189Q5VU69 101 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 ANKRD26P1Q6NSI1 321 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 ARMC6Q6NXE6 501 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 RBM43Q6ZSC3 357 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 VN1R5Q7Z5H4 357 aa11.45□□□□□ -0.58
LIMCH1-217ENST00000512946 HIPK1Q86Z02 1210 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms