RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 ERMARDQ5T6L9 678 aa30.61■■■□□ 2.49
LIMCH1-211ENST00000509638 ACBD5Q5T8D3 534 aaPredicted RBP30.61■■■□□ 2.49
LIMCH1-211ENST00000509638 IER5LQ5T953 404 aa30.61■■■□□ 2.49
LIMCH1-211ENST00000509638 FYB2Q5VWT5 728 aa30.61■■■□□ 2.49
LIMCH1-211ENST00000509638 FBXL22Q6P050 247 aa30.61■■■□□ 2.49
LIMCH1-211ENST00000509638 C14orf80Q86SX3 495 aa30.61■■■□□ 2.49
LIMCH1-211ENST00000509638 PYROXD2Q8N2H3 581 aa30.61■■■□□ 2.49
LIMCH1-211ENST00000509638 HJURPQ8NCD3 748 aaPredicted RBP30.61■■■□□ 2.49
LIMCH1-211ENST00000509638 DDI1Q8WTU0 396 aa30.61■■■□□ 2.49
LIMCH1-211ENST00000509638 C1orf74Q96LT6 269 aa30.61■■■□□ 2.49
LIMCH1-211ENST00000509638 MAGEB5Q9BZ81 275 aa30.61■■■□□ 2.49
LIMCH1-211ENST00000509638 OR12D3Q9UGF7 316 aa30.61■■■□□ 2.49
LIMCH1-211ENST00000509638 CAPN6Q9Y6Q1 641 aa30.61■■■□□ 2.49
LIMCH1-211ENST00000509638 PIAS3Q9Y6X2 628 aa30.61■■■□□ 2.49
LIMCH1-211ENST00000509638 GRID2IPA4D2P6 1211 aa30.6■■■□□ 2.49
LIMCH1-211ENST00000509638 SLC1A1P43005 524 aa30.6■■■□□ 2.49
LIMCH1-211ENST00000509638 RPS24P62847 133 aaKnown RBP30.6■■■□□ 2.49
LIMCH1-211ENST00000509638 GAD2Q05329 585 aa30.6■■■□□ 2.49
LIMCH1-211ENST00000509638 GAB4Q2WGN9 574 aa30.6■■■□□ 2.49
LIMCH1-211ENST00000509638 MPPE1Q53F39 396 aa30.6■■■□□ 2.49
LIMCH1-211ENST00000509638 RPRD1AQ96P16 312 aaPredicted RBP30.6■■■□□ 2.49
LIMCH1-211ENST00000509638 OSBPL2Q9H1P3 480 aa30.6■■■□□ 2.49
LIMCH1-211ENST00000509638 TYW5A2RUC4 315 aaKnown RBP30.59■■■□□ 2.49
LIMCH1-211ENST00000509638 E9PAM4 449 aa30.59■■■□□ 2.49
LIMCH1-211ENST00000509638 PENKP01210 267 aaPredicted RBP30.59■■■□□ 2.49
LIMCH1-211ENST00000509638 TYRP14679 529 aa30.59■■■□□ 2.49
LIMCH1-211ENST00000509638 GJA4P35212 333 aa30.59■■■□□ 2.49
LIMCH1-211ENST00000509638 CA9Q16790 459 aa30.59■■■□□ 2.49
LIMCH1-211ENST00000509638 RABGAP1LQ5R372 815 aa30.59■■■□□ 2.49
LIMCH1-211ENST00000509638 ZNF683Q8IZ20 524 aa30.59■■■□□ 2.49
LIMCH1-211ENST00000509638 CFAP52Q8N1V2 620 aa30.59■■■□□ 2.49
LIMCH1-211ENST00000509638 HSPH1Q92598 858 aa30.59■■■□□ 2.49
LIMCH1-211ENST00000509638 CHFRQ96EP1 664 aa30.59■■■□□ 2.49
LIMCH1-211ENST00000509638 TMA16Q96EY4 203 aaKnown RBP30.59■■■□□ 2.49
LIMCH1-211ENST00000509638 DHX35Q9H5Z1 703 aaKnown RBP30.59■■■□□ 2.49
LIMCH1-211ENST00000509638 STAU2Q9NUL3 570 aaKnown RBP eCLIP30.59■■■□□ 2.49
LIMCH1-211ENST00000509638 FBXL21Q9UKT6 434 aa30.59■■■□□ 2.49
LIMCH1-211ENST00000509638 CA14Q9ULX7 337 aa30.59■■■□□ 2.49
LIMCH1-211ENST00000509638 ALG6Q9Y672 507 aa30.59■■■□□ 2.49
LIMCH1-211ENST00000509638 FAM72CH0Y354 149 aa30.58■■■□□ 2.49
LIMCH1-211ENST00000509638 HOXD9P28356 352 aaPredicted RBP30.58■■■□□ 2.49
LIMCH1-211ENST00000509638 IRAK1P51617 712 aa30.58■■■□□ 2.49
LIMCH1-211ENST00000509638 FAM72AQ5TYM5 149 aa30.58■■■□□ 2.49
LIMCH1-211ENST00000509638 FAM72DQ6L9T8 149 aa30.58■■■□□ 2.49
LIMCH1-211ENST00000509638 FAM72BQ86X60 149 aa30.58■■■□□ 2.49
LIMCH1-211ENST00000509638 CIR1Q86X95 450 aaPredicted RBP30.58■■■□□ 2.49
LIMCH1-211ENST00000509638 PSTKQ8IV42 348 aaKnown RBP30.58■■■□□ 2.49
LIMCH1-211ENST00000509638 RNF10Q8N5U6 811 aaKnown RBP30.58■■■□□ 2.49
LIMCH1-211ENST00000509638 LRRC57Q8N9N7 239 aa30.58■■■□□ 2.49
LIMCH1-211ENST00000509638 TEKT4Q8WW24 435 aa30.58■■■□□ 2.49
LIMCH1-211ENST00000509638 IGSF8Q969P0 613 aa30.58■■■□□ 2.49
LIMCH1-211ENST00000509638 IRX2Q9BZI1 471 aaPredicted RBP30.58■■■□□ 2.49
LIMCH1-211ENST00000509638 ZSCAN12O43309 604 aa30.58■■■□□ 2.49
LIMCH1-211ENST00000509638 TBL1XO60907 577 aa30.58■■■□□ 2.49
LIMCH1-211ENST00000509638 SRGAP2O75044 1071 aa30.58■■■□□ 2.49
LIMCH1-211ENST00000509638 RARAP10276 462 aa30.58■■■□□ 2.49
LIMCH1-211ENST00000509638 CTHP32929 405 aa30.58■■■□□ 2.49
LIMCH1-211ENST00000509638 NRG1Q02297 640 aaPredicted RBP30.58■■■□□ 2.49
LIMCH1-211ENST00000509638 BOLA3Q53S33 107 aa30.58■■■□□ 2.49
LIMCH1-211ENST00000509638 MANEALQ5VSG8 457 aa30.58■■■□□ 2.49
LIMCH1-211ENST00000509638 LRRC31Q6UY01 552 aa30.58■■■□□ 2.49
LIMCH1-211ENST00000509638 C12orf40Q86WS4 652 aa30.58■■■□□ 2.49
LIMCH1-211ENST00000509638 ARHGEF3Q9NR81 526 aa30.58■■■□□ 2.49
LIMCH1-211ENST00000509638 SPECC1L-ADORA2AF8WAN1 911 aa30.57■■■□□ 2.48
LIMCH1-211ENST00000509638 PALMO75781 387 aa30.57■■■□□ 2.48
LIMCH1-211ENST00000509638 ZXDAP98168 799 aa30.57■■■□□ 2.48
LIMCH1-211ENST00000509638 TTC39BQ5VTQ0 682 aaPredicted RBP30.57■■■□□ 2.48
LIMCH1-211ENST00000509638 KLHL11Q9NVR0 708 aa30.57■■■□□ 2.48
LIMCH1-211ENST00000509638 STIM2Q9P246 746 aa30.57■■■□□ 2.48
LIMCH1-211ENST00000509638 DCXO43602 365 aa30.56■■■□□ 2.48
LIMCH1-211ENST00000509638 CACNG3O60359 315 aa30.56■■■□□ 2.48
LIMCH1-211ENST00000509638 LRIG2O94898 1065 aa30.56■■■□□ 2.48
LIMCH1-211ENST00000509638 KRT7P08729 469 aa30.56■■■□□ 2.48
LIMCH1-211ENST00000509638 SEMA3BQ13214 749 aa30.56■■■□□ 2.48
LIMCH1-211ENST00000509638 MLF2Q15773 248 aaPredicted RBP30.56■■■□□ 2.48
LIMCH1-211ENST00000509638 SLC44A4Q53GD3 710 aa30.56■■■□□ 2.48
LIMCH1-211ENST00000509638 PPP6R3Q5H9R7 873 aaPredicted RBP30.56■■■□□ 2.48
LIMCH1-211ENST00000509638 MPP7Q5T2T1 576 aa30.56■■■□□ 2.48
LIMCH1-211ENST00000509638 ARTNQ5T4W7 220 aa30.56■■■□□ 2.48
LIMCH1-211ENST00000509638 NAIF1Q69YI7 327 aaPredicted RBP30.56■■■□□ 2.48
LIMCH1-211ENST00000509638 TPRG1Q6ZUI0 275 aa30.56■■■□□ 2.48
LIMCH1-211ENST00000509638 POLNQ7Z5Q5 900 aa30.56■■■□□ 2.48
LIMCH1-211ENST00000509638 NAT16Q8N8M0 369 aa30.56■■■□□ 2.48
LIMCH1-211ENST00000509638 KIAA1524Q8TCG1 905 aa30.56■■■□□ 2.48
LIMCH1-211ENST00000509638 KCTD15Q96SI1 283 aaPredicted RBP30.56■■■□□ 2.48
LIMCH1-211ENST00000509638 EPAS1Q99814 870 aa30.56■■■□□ 2.48
LIMCH1-211ENST00000509638 C8orf33Q9H7E9 229 aaPredicted RBP30.56■■■□□ 2.48
LIMCH1-211ENST00000509638 WNT16Q9UBV4 365 aa30.56■■■□□ 2.48
LIMCH1-211ENST00000509638 NEU3Q9UQ49 428 aa30.56■■■□□ 2.48
LIMCH1-211ENST00000509638 IGLV3-10A0A075B6K4 115 aa30.55■■■□□ 2.48
LIMCH1-211ENST00000509638 CREB3O43889 395 aa30.55■■■□□ 2.48
LIMCH1-211ENST00000509638 TNNT1P13805 278 aa30.55■■■□□ 2.48
LIMCH1-211ENST00000509638 L1CAMP32004 1257 aa30.55■■■□□ 2.48
LIMCH1-211ENST00000509638 DPYSL2Q16555 572 aa30.55■■■□□ 2.48
LIMCH1-211ENST00000509638 ETFBKMTQ8IXQ9 262 aa30.55■■■□□ 2.48
LIMCH1-211ENST00000509638 TRMT1Q9NXH9 659 aaKnown RBP30.55■■■□□ 2.48
LIMCH1-211ENST00000509638 C5orf22Q49AR2 442 aa30.54■■■□□ 2.48
LIMCH1-211ENST00000509638 RNF43Q68DV7 783 aa30.54■■■□□ 2.48
LIMCH1-211ENST00000509638 RWDD4Q6NW29 188 aaKnown RBP30.54■■■□□ 2.48
LIMCH1-211ENST00000509638 TXNDC11Q6PKC3 985 aa30.54■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms