RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 PRSS55Q6UWB4 352 aaPredicted RBP8.62□□□□□ -1.03
USP54-215ENST00000497106 TRIM42Q8IWZ5 723 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 HJURPQ8NCD3 748 aaPredicted RBP8.62□□□□□ -1.03
USP54-215ENST00000497106 C3orf58Q8NDZ4 430 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 ATP6V1G3Q96LB4 118 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 MCOLN1Q9GZU1 580 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 CALCOCO1Q9P1Z2 691 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 MAGEB16A2A368 324 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 ZSCAN5CA6NGD5 496 aaPredicted RBP8.61□□□□□ -1.03
USP54-215ENST00000497106 CDH16O75309 829 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 PAGE1O75459 146 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 KIAA0754O94854 1291 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 CHKAP35790 457 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 YBEYP58557 167 aaPredicted RBP8.61□□□□□ -1.03
USP54-215ENST00000497106 THOC5Q13769 683 aaKnown RBP8.61□□□□□ -1.03
USP54-215ENST00000497106 SLC9A4Q6AI14 798 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 AADACL2Q6P093 401 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 SERPINB12Q96P63 405 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 HINFPQ9BQA5 517 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 PAAF1Q9BRP4 392 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 GPR62Q9BZJ7 368 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 TCRBV5S1A1TA0A578 114 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 PABPN1LA6NDY0 278 aaKnown RBP8.61□□□□□ -1.03
USP54-215ENST00000497106 TULP2O00295 520 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 FGF18O76093 207 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 ACSL3O95573 720 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 APRTP07741 180 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 ABHD2P08910 425 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 ERCC2P18074 760 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 RECQLP46063 649 aaPredicted RBP8.61□□□□□ -1.03
USP54-215ENST00000497106 NDST2P52849 883 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 SLC12A2P55011 1212 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 RING1Q06587 406 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 NAB1Q13506 487 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 PARP15Q460N3 678 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 SLC8B1Q6J4K2 584 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.61□□□□□ -1.03
USP54-215ENST00000497106 PLD5Q8N7P1 536 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 PPP1R14CQ8TAE6 165 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 ADAM32Q8TC27 787 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 FBXO25Q8TCJ0 367 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 DIS3LQ8TF46 1054 aaKnown RBP8.61□□□□□ -1.03
USP54-215ENST00000497106 DEPDC1BQ8WUY9 529 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 CFAP36Q96G28 342 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 FUT8Q9BYC5 575 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 ENDOD1O94919 500 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 LATS1O95835 1130 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 IRF1P10914 325 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 GOT1P17174 413 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 HPDP32754 393 aaPredicted RBP8.61□□□□□ -1.03
USP54-215ENST00000497106 PTGIRP43119 386 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 GATMP50440 423 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 HHATQ5VTY9 493 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 IL31Q6EBC2 164 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 TMC3Q7Z5M5 1100 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 TAB3Q8N5C8 712 aaPredicted RBP8.61□□□□□ -1.03
USP54-215ENST00000497106 SLC35B2Q8TB61 432 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 LINC01599Q8WXQ3 324 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 LPIN3Q9BQK8 851 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 MUC3BQ9H195 1237 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 ATXN3LQ9H3M9 355 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 CACNG4Q9UBN1 327 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 MEFVO15553 781 aaPredicted RBP8.61□□□□□ -1.03
USP54-215ENST00000497106 MYL4P12829 197 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 HSD17B3P37058 310 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 GGCXP38435 758 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 TWF1Q12792 350 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 CDH18Q13634 790 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 CLEC4CQ8WTT0 213 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 C1orf74Q96LT6 269 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 TCF25Q9BQ70 676 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 SPON2Q9BUD6 331 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 ARHGEF4Q9NR80 690 aa8.61□□□□□ -1.03
USP54-215ENST00000497106 CLDN11O75508 207 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 TPSB2P20231 275 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 TPSAB1Q15661 275 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 ZRSR2Q15696 482 aaKnown RBP8.6□□□□□ -1.03
USP54-215ENST00000497106 PREPLQ4J6C6 727 aaPredicted RBP8.6□□□□□ -1.03
USP54-215ENST00000497106 YAF2Q8IY57 180 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 CCDC185Q8N715 623 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 BADQ92934 168 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 ALKBH8Q96BT7 664 aaKnown RBP8.6□□□□□ -1.03
USP54-215ENST00000497106 FCRL2Q96LA5 508 aaPredicted RBP8.6□□□□□ -1.03
USP54-215ENST00000497106 FAM118BQ9BPY3 351 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 CINPQ9BW66 212 aaPredicted RBP8.6□□□□□ -1.03
USP54-215ENST00000497106 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.6□□□□□ -1.03
USP54-215ENST00000497106 C5orf60A6NFR6 353 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 KCNU1A8MYU2 1149 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 POC1B-GALNT4F8VUJ3 575 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 H0Y626 953 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 HCRTO43612 131 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 CTSAP10619 480 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 NR1D1P20393 614 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 IL1R2P27930 398 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 NPY2RP49146 381 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 TAF5Q15542 800 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 UGP2Q16851 508 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 TRAF7Q6Q0C0 670 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 LGI2Q8N0V4 545 aa8.6□□□□□ -1.03
USP54-215ENST00000497106 LMAN2LQ9H0V9 348 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 107.3 ms