RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 TP63Q9H3D4 680 aaPredicted RBP6.42□□□□□ -1.38
SF3B1-212ENST00000496458 CCDC134Q9H6E4 229 aa6.42□□□□□ -1.38
SF3B1-212ENST00000496458 ERVK-5Q9HDB9 667 aa6.42□□□□□ -1.38
SF3B1-212ENST00000496458 OBP2BQ9NPH6 170 aa6.42□□□□□ -1.38
SF3B1-212ENST00000496458 POT1Q9NUX5 634 aa6.42□□□□□ -1.38
SF3B1-212ENST00000496458 RAB21Q9UL25 225 aa6.42□□□□□ -1.38
SF3B1-212ENST00000496458 TRPC5Q9UL62 973 aaPredicted RBP6.42□□□□□ -1.38
SF3B1-212ENST00000496458 A0A087WV62 115 aa6.41□□□□□ -1.38
SF3B1-212ENST00000496458 LGALS16A8MUM7 142 aa6.41□□□□□ -1.38
SF3B1-212ENST00000496458 SGPL1O95470 568 aa6.41□□□□□ -1.38
SF3B1-212ENST00000496458 ALDOAP04075 364 aaKnown RBP6.41□□□□□ -1.38
SF3B1-212ENST00000496458 SETSIPP0DME0 302 aa6.41□□□□□ -1.38
SF3B1-212ENST00000496458 RPL15P61313 204 aaKnown RBP6.41□□□□□ -1.38
SF3B1-212ENST00000496458 HDAC1Q13547 482 aaPredicted RBP6.41□□□□□ -1.38
SF3B1-212ENST00000496458 BTBD16Q32M84 506 aa6.41□□□□□ -1.38
SF3B1-212ENST00000496458 TOGARAM2Q6ZUX3 1019 aa6.41□□□□□ -1.38
SF3B1-212ENST00000496458 NOL8Q76FK4 1167 aaKnown RBP6.41□□□□□ -1.38
SF3B1-212ENST00000496458 PIMREGQ9BSJ6 248 aa6.41□□□□□ -1.38
SF3B1-212ENST00000496458 MECRQ9BV79 373 aa6.41□□□□□ -1.38
SF3B1-212ENST00000496458 NFU1Q9UMS0 254 aa6.41□□□□□ -1.38
SF3B1-212ENST00000496458 SLC8A2Q9UPR5 921 aa6.41□□□□□ -1.38
SF3B1-212ENST00000496458 PSG1P11464 419 aa6.4□□□□□ -1.38
SF3B1-212ENST00000496458 GRK5P34947 590 aa6.4□□□□□ -1.38
SF3B1-212ENST00000496458 FAM3BP58499 235 aaPredicted RBP6.4□□□□□ -1.38
SF3B1-212ENST00000496458 SHC2P98077 582 aa6.4□□□□□ -1.38
SF3B1-212ENST00000496458 TNFAIP2Q03169 654 aa6.4□□□□□ -1.38
SF3B1-212ENST00000496458 TLE3Q04726 772 aa6.4□□□□□ -1.38
SF3B1-212ENST00000496458 RNASELQ05823 741 aaKnown RBP6.4□□□□□ -1.38
SF3B1-212ENST00000496458 MIDNQ504T8 468 aa6.4□□□□□ -1.38
SF3B1-212ENST00000496458 ADGRF3Q8IZF5 1079 aa6.4□□□□□ -1.38
SF3B1-212ENST00000496458 ADPRHL1Q8NDY3 354 aa6.4□□□□□ -1.38
SF3B1-212ENST00000496458 MPLKIPQ8TAP9 179 aa6.4□□□□□ -1.38
SF3B1-212ENST00000496458 VCPIP1Q96JH7 1222 aa6.4□□□□□ -1.38
SF3B1-212ENST00000496458 ZNF347Q96SE7 839 aa6.4□□□□□ -1.38
SF3B1-212ENST00000496458 WDR12Q9GZL7 423 aaKnown RBP6.4□□□□□ -1.38
SF3B1-212ENST00000496458 MSRB1Q9NZV6 116 aa6.4□□□□□ -1.38
SF3B1-212ENST00000496458 COG5Q9UP83 839 aa6.4□□□□□ -1.38
SF3B1-212ENST00000496458 SLC12A4Q9UP95 1085 aa6.4□□□□□ -1.38
SF3B1-212ENST00000496458 ZBTB1Q9Y2K1 713 aa6.4□□□□□ -1.38
SF3B1-212ENST00000496458 TRBV5-3A0A0A0MS03 114 aa6.39□□□□□ -1.39
SF3B1-212ENST00000496458 A0A1W2PPC1 479 aa6.39□□□□□ -1.39
SF3B1-212ENST00000496458 MYMKA6NI61 221 aa6.39□□□□□ -1.39
SF3B1-212ENST00000496458 C3orf70A6NLC5 250 aaPredicted RBP6.39□□□□□ -1.39
SF3B1-212ENST00000496458 GYS1P13807 737 aa6.39□□□□□ -1.39
SF3B1-212ENST00000496458 TGM2P21980 687 aa6.39□□□□□ -1.39
SF3B1-212ENST00000496458 HTR3AP46098 478 aa6.39□□□□□ -1.39
SF3B1-212ENST00000496458 POLGP54098 1239 aaPredicted RBP6.39□□□□□ -1.39
SF3B1-212ENST00000496458 SF3A3Q12874 501 aaKnown RBP eCLIP6.39□□□□□ -1.39
SF3B1-212ENST00000496458 ZNF569Q5MCW4 686 aa6.39□□□□□ -1.39
SF3B1-212ENST00000496458 PGBD2Q6P3X8 592 aa6.39□□□□□ -1.39
SF3B1-212ENST00000496458 COLCA1Q6ZS62 124 aa6.39□□□□□ -1.39
SF3B1-212ENST00000496458 MMP21Q8N119 569 aa6.39□□□□□ -1.39
SF3B1-212ENST00000496458 FAM47BQ8NA70 645 aa6.39□□□□□ -1.39
SF3B1-212ENST00000496458 OR1N1Q8NGS0 311 aa6.39□□□□□ -1.39
SF3B1-212ENST00000496458 CRB3Q9BUF7 120 aa6.39□□□□□ -1.39
SF3B1-212ENST00000496458 SEMA4BQ9NPR2 832 aaPredicted RBP6.39□□□□□ -1.39
SF3B1-212ENST00000496458 MTPAPQ9NVV4 582 aaKnown RBP eCLIP6.39□□□□□ -1.39
SF3B1-212ENST00000496458 AGO2Q9UKV8 859 aaKnown RBP6.39□□□□□ -1.39
SF3B1-212ENST00000496458 TBC1D3DA0A087WVF3 549 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 TBC1D3IA0A087WXS9 549 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 TBC1D3EA0A087X179 549 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 TBC1D3KA0A087X1G2 549 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 CCDC194A0A1B0GVG4 234 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 ABHD14A-ACY1A0A1B0GW23 586 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 TBC1D3BA6NDS4 549 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 TBC1D3FA6NER0 549 aaPredicted RBP6.38□□□□□ -1.39
SF3B1-212ENST00000496458 TBC1D3LB9A6J9 549 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 H3BNX3 289 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 TLX3O43711 291 aaPredicted RBP6.38□□□□□ -1.39
SF3B1-212ENST00000496458 TULP3O75386 442 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 SKAP2O75563 359 aaPredicted RBP6.38□□□□□ -1.39
SF3B1-212ENST00000496458 ALDOCP09972 364 aaKnown RBP6.38□□□□□ -1.39
SF3B1-212ENST00000496458 TBC1D3HP0C7X1 549 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 SCP2P22307 547 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 FOXL2P58012 376 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 UBE4AQ14139 1066 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 PTK2BQ14289 1009 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 BRD3Q15059 726 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 TWIST1Q15672 202 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 PFKFB4Q16877 469 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 TBC1D3GQ6DHY5 549 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 TBC1D3CQ6IPX1 549 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 LRIG3Q6UXM1 1119 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 PIM3Q86V86 326 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 TBC1D3Q8IZP1 549 aaPredicted RBP6.38□□□□□ -1.39
SF3B1-212ENST00000496458 C9orf106Q8NAJ2 232 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 SLC44A5Q8NCS7 719 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 OR52N4Q8NGI2 321 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 HMGB4Q8WW32 186 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 HTATIP2Q9BUP3 242 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 OSBPL5Q9H0X9 879 aaPredicted RBP6.38□□□□□ -1.39
SF3B1-212ENST00000496458 AAMDCQ9H7C9 122 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 SFXN1Q9H9B4 322 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 THSD1Q9NS62 852 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 ZBTB40Q9NUA8 1239 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 UTS2RQ9UKP6 389 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 CNTN6Q9UQ52 1028 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 SQORQ9Y6N5 450 aa6.38□□□□□ -1.39
SF3B1-212ENST00000496458 ZNF335Q9H4Z2 1342 aaPredicted RBP6.37□□□□□ -1.39
SF3B1-212ENST00000496458 SLC38A8A6NNN8 435 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms