RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 CD99L2Q8TCZ2 262 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SLITRK1Q96PX8 696 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 GRIP2Q9C0E4 1043 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 PAIP1Q9H074 479 aaKnown RBP11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SLCO1B3Q9NPD5 702 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 PCMTD2Q9NV79 361 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 APPL1Q9UKG1 709 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ITGA11Q9UKX5 1188 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 LRRC42Q9Y546 428 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 TMEM191CA6NGB0 347 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SLC15A5A6NIM6 579 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 IL1R2P27930 398 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ABL2P42684 1182 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ASPAP45381 313 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 KCNA10Q16322 511 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 KHDC1Q4VXA5 237 aaKnown RBP11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 IPMKQ8NFU5 416 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 TLCD1Q96CP7 247 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 FBXL18Q96ME1 805 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ZNF317Q96PQ6 595 aaPredicted RBP11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 KLHL4Q9C0H6 718 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 TRPV6Q9H1D0 765 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 RSAD1Q9HA92 442 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ETNK2Q9NVF9 386 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SMPD4Q9NXE4 827 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 FLRT1Q9NZU1 646 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ADAMTS5Q9UNA0 930 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 COQ4Q9Y3A0 265 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 MYO18AQ92614 2054 aaKnown RBP11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 CES2O00748 559 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 CCDC166P0CW27 439 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 GOT1P17174 413 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 KDELR1P24390 212 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SLC12A2P55011 1212 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ATP1A4Q13733 1029 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 EFTUD2Q15029 972 aaKnown RBP eCLIP11.03□□□□□ -0.646e-10■■■■■ 30
MSH5-SAPCD1-207ENST00000493662 TARBP2Q15633 366 aaKnown RBP11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 PDZD8Q8NEN9 1154 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 C16orf70Q9BSU1 422 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ZBED2Q9BTP6 218 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SNRNP25Q9BV90 132 aaKnown RBP11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 CAAP1Q9H8G2 361 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 TRPC7Q9HCX4 862 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ARHGEF38Q9NXL2 777 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SATB2Q9UPW6 733 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 RBM47A0AV96 593 aaKnown RBP11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 PEX11AO75192 247 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 STBD1O95210 358 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 TTC4O95801 387 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ELK3P41970 407 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 GDF10P55107 478 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 TBC1D25Q3MII6 688 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 RBM44Q6ZP01 1051 aaKnown RBP11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 PRPF39Q86UA1 669 aaKnown RBP11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 OR6P1Q8NGX9 317 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SH3TC2Q8TF17 1288 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 DDI1Q8WTU0 396 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 GTF3C2Q8WUA4 911 aaPredicted RBP11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 DNAJC1Q96KC8 554 aaKnown RBP11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ZNF512Q96ME7 567 aaPredicted RBP11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 PAAF1Q9BRP4 392 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 MTG1Q9BT17 334 aaPredicted RBP11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SPATA16Q9BXB7 569 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ZNF518BQ9C0D4 1074 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 WDCPQ9H6R7 721 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 MANSC1Q9H8J5 431 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ACSS2Q9NR19 701 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 CNTRLQ7Z7A1 2325 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ITGA2BP08514 1039 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 TFE3P19532 575 aaPredicted RBP11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 BCAT1P54687 386 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 GBE1Q04446 702 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 OCA2Q04671 838 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 EFEMP1Q12805 493 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 CCNG2Q16589 344 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 CA9Q16790 459 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 TRIM16LQ309B1 348 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 CCDC14Q49A88 953 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SPDYCQ5MJ68 293 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 DUPD1Q68J44 220 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 FOXR2Q6PJQ5 311 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 KCNT2Q6UVM3 1135 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 GIPC2Q8TF65 315 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SGF29Q96ES7 293 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SAR1AQ9NR31 198 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ATP11BQ9Y2G3 1177 aa11.03□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 MYBPHLA2RUH7 354 aa11.02□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 MDM4O15151 490 aa11.02□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 FKBP6O75344 327 aa11.02□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 JCHAINP01591 159 aa11.02□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 VCPP55072 806 aaKnown RBP11.02□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 PRAMEP78395 509 aa11.02□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 POU5F1BQ06416 359 aa11.02□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 DDR2Q16832 855 aa11.02□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 OVOS1Q6IE37 1185 aa11.02□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ATP11CQ8NB49 1132 aa11.02□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 PTPRN2Q92932 1015 aa11.02□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 DGCR14Q96DF8 476 aaKnown RBP11.02□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 TBCBQ99426 244 aa11.02□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SENP6Q9GZR1 1112 aaPredicted RBP11.02□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 101.8 ms