RNA–Protein interactions for RNA: ENST00000493430.5

PTCD3-218, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 782 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-218ENST00000493430 SLC14A1Q13336 389 aa3.8□□□□□ -1.8
PTCD3-218ENST00000493430 ARHGEF7Q14155 803 aa3.8□□□□□ -1.8
PTCD3-218ENST00000493430 SEMA3AQ14563 771 aa3.8□□□□□ -1.8
PTCD3-218ENST00000493430 TTF1Q15361 905 aaPredicted RBP3.8□□□□□ -1.8
PTCD3-218ENST00000493430 NPY5RQ15761 445 aa3.8□□□□□ -1.8
PTCD3-218ENST00000493430 PFKFB3Q16875 520 aaPredicted RBP3.8□□□□□ -1.8
PTCD3-218ENST00000493430 FAM110CQ1W6H9 321 aa3.8□□□□□ -1.8
PTCD3-218ENST00000493430 ZNF750Q32MQ0 723 aa3.8□□□□□ -1.8
PTCD3-218ENST00000493430 LVRNQ6Q4G3 990 aa3.8□□□□□ -1.8
PTCD3-218ENST00000493430 COLCA1Q6ZS62 124 aa3.8□□□□□ -1.8
PTCD3-218ENST00000493430 TPH2Q8IWU9 490 aa3.8□□□□□ -1.8
PTCD3-218ENST00000493430 ACRBPQ8NEB7 543 aa3.8□□□□□ -1.8
PTCD3-218ENST00000493430 SPATA3Q8NHX4 192 aa3.8□□□□□ -1.8
PTCD3-218ENST00000493430 EDC3Q96F86 508 aaKnown RBP3.8□□□□□ -1.8
PTCD3-218ENST00000493430 COG3Q96JB2 828 aa3.8□□□□□ -1.8
PTCD3-218ENST00000493430 HIC2Q96JB3 615 aa3.8□□□□□ -1.8
PTCD3-218ENST00000493430 VPS50Q96JG6 964 aa3.8□□□□□ -1.8
PTCD3-218ENST00000493430 B3GNT5Q9BYG0 378 aa3.8□□□□□ -1.8
PTCD3-218ENST00000493430 FAM234AQ9H0X4 552 aa3.8□□□□□ -1.8
PTCD3-218ENST00000493430 DHX36Q9H2U1 1008 aaKnown RBP3.8□□□□□ -1.8
PTCD3-218ENST00000493430 SACM1LQ9NTJ5 587 aa3.8□□□□□ -1.8
PTCD3-218ENST00000493430 WDR90Q96KV7 1748 aa3.8□□□□□ -1.8
PTCD3-218ENST00000493430 ADAMTSL1Q8N6G6 1762 aa3.79□□□□□ -1.8
PTCD3-218ENST00000493430 RTL1A6NKG5 1358 aa3.79□□□□□ -1.8
PTCD3-218ENST00000493430 INSRP06213 1382 aa3.79□□□□□ -1.8
PTCD3-218ENST00000493430 TRIM43BA6NCK2 446 aa3.79□□□□□ -1.8
PTCD3-218ENST00000493430 PRR23D1E9PI22 279 aaPredicted RBP3.79□□□□□ -1.8
PTCD3-218ENST00000493430 CTNND1O60716 968 aaKnown RBP3.79□□□□□ -1.8
PTCD3-218ENST00000493430 PARP1P09874 1014 aaKnown RBP3.79□□□□□ -1.8
PTCD3-218ENST00000493430 PRR23D2P0DMB1 279 aaPredicted RBP3.79□□□□□ -1.8
PTCD3-218ENST00000493430 MCM5P33992 734 aa3.79□□□□□ -1.8
PTCD3-218ENST00000493430 CPA2P48052 419 aa3.79□□□□□ -1.8
PTCD3-218ENST00000493430 HTR6P50406 440 aa3.79□□□□□ -1.8
PTCD3-218ENST00000493430 KRTAP10-6P60371 365 aaPredicted RBP3.79□□□□□ -1.8
PTCD3-218ENST00000493430 TMF1P82094 1093 aa3.79□□□□□ -1.8
PTCD3-218ENST00000493430 MCL1Q07820 350 aa3.79□□□□□ -1.8
PTCD3-218ENST00000493430 MTX1Q13505 466 aa3.79□□□□□ -1.8
PTCD3-218ENST00000493430 EIF4A2Q14240 407 aaKnown RBP3.79□□□□□ -1.8
PTCD3-218ENST00000493430 ERV3-1Q14264 604 aa3.79□□□□□ -1.8
PTCD3-218ENST00000493430 SLC29A2Q14542 456 aa3.79□□□□□ -1.8
PTCD3-218ENST00000493430 ST3GAL2Q16842 350 aa3.79□□□□□ -1.8
PTCD3-218ENST00000493430 DAB2IPQ5VWQ8 1189 aa3.79□□□□□ -1.8
PTCD3-218ENST00000493430 COL23A1Q86Y22 540 aaPredicted RBP3.79□□□□□ -1.8
PTCD3-218ENST00000493430 PNPLA1Q8N8W4 532 aa3.79□□□□□ -1.8
PTCD3-218ENST00000493430 FAM71DQ8N9W8 422 aa3.79□□□□□ -1.8
PTCD3-218ENST00000493430 KCNH5Q8NCM2 988 aa3.79□□□□□ -1.8
PTCD3-218ENST00000493430 SMCR8Q8TEV9 937 aaPredicted RBP3.79□□□□□ -1.8
PTCD3-218ENST00000493430 IP6K1Q92551 441 aa3.79□□□□□ -1.8
PTCD3-218ENST00000493430 TRIM43Q96BQ3 446 aaPredicted RBP3.79□□□□□ -1.8
PTCD3-218ENST00000493430 ZNF668Q96K58 619 aaPredicted RBP3.79□□□□□ -1.8
PTCD3-218ENST00000493430 STK31Q9BXU1 1019 aa3.79□□□□□ -1.8
PTCD3-218ENST00000493430 PANK3Q9H999 370 aa3.79□□□□□ -1.8
PTCD3-218ENST00000493430 USP29Q9HBJ7 922 aa3.79□□□□□ -1.8
PTCD3-218ENST00000493430 TYW1Q9NV66 732 aaKnown RBP3.79□□□□□ -1.8
PTCD3-218ENST00000493430 STK32BQ9NY57 414 aa3.79□□□□□ -1.8
PTCD3-218ENST00000493430 TERF2IPQ9NYB0 399 aa3.79□□□□□ -1.8
PTCD3-218ENST00000493430 CPNE7Q9UBL6 633 aa3.79□□□□□ -1.8
PTCD3-218ENST00000493430 HDAC9Q9UKV0 1011 aa3.79□□□□□ -1.8
PTCD3-218ENST00000493430 ZSCAN21Q9Y5A6 473 aaPredicted RBP3.79□□□□□ -1.8
PTCD3-218ENST00000493430 MYH13Q9UKX3 1938 aa3.79□□□□□ -1.8
PTCD3-218ENST00000493430 MRC1P22897 1456 aa3.79□□□□□ -1.8
PTCD3-218ENST00000493430 PALLDQ8WX93 1383 aa3.78□□□□□ -1.8
PTCD3-218ENST00000493430 LOC105378220A0A1B0GUY1 285 aaPredicted RBP3.78□□□□□ -1.8
PTCD3-218ENST00000493430 CFAP69A5D8W1 941 aa3.78□□□□□ -1.8
PTCD3-218ENST00000493430 AQP7P3A6NL99 342 aa3.78□□□□□ -1.8
PTCD3-218ENST00000493430 ISM1B1AKI9 464 aa3.78□□□□□ -1.8
PTCD3-218ENST00000493430 AKAP10O43572 662 aa3.78□□□□□ -1.8
PTCD3-218ENST00000493430 TOMM40O96008 361 aa3.78□□□□□ -1.8
PTCD3-218ENST00000493430 HMOX1P09601 288 aa3.78□□□□□ -1.8
PTCD3-218ENST00000493430 MYBP10242 640 aa3.78□□□□□ -1.8
PTCD3-218ENST00000493430 ADRA1DP25100 572 aa3.78□□□□□ -1.8
PTCD3-218ENST00000493430 RAB27AP51159 221 aa3.78□□□□□ -1.8
PTCD3-218ENST00000493430 DEUP1Q05D60 604 aa3.78□□□□□ -1.8
PTCD3-218ENST00000493430 STK3Q13188 491 aa3.78□□□□□ -1.8
PTCD3-218ENST00000493430 ITPK1Q13572 414 aa3.78□□□□□ -1.8
PTCD3-218ENST00000493430 EPM2AIP1Q7L775 607 aaPredicted RBP3.78□□□□□ -1.8
PTCD3-218ENST00000493430 OVCH2Q7RTZ1 564 aa3.78□□□□□ -1.8
PTCD3-218ENST00000493430 MMP21Q8N119 569 aa3.78□□□□□ -1.8
PTCD3-218ENST00000493430 METTL25Q8N6Q8 603 aa3.78□□□□□ -1.8
PTCD3-218ENST00000493430 C11orf44Q8N8P7 122 aa3.78□□□□□ -1.8
PTCD3-218ENST00000493430 SMRP1Q8NCR6 262 aa3.78□□□□□ -1.8
PTCD3-218ENST00000493430 NMD3Q96D46 503 aaKnown RBP3.78□□□□□ -1.8
PTCD3-218ENST00000493430 KAZALD1Q96I82 304 aa3.78□□□□□ -1.8
PTCD3-218ENST00000493430 THOC3Q96J01 351 aaKnown RBP3.78□□□□□ -1.8
PTCD3-218ENST00000493430 TMEM60Q9H2L4 133 aa3.78□□□□□ -1.8
PTCD3-218ENST00000493430 HIPK2Q9H2X6 1198 aa3.78□□□□□ -1.8
PTCD3-218ENST00000493430 FAM83DQ9H4H8 585 aa3.78□□□□□ -1.8
PTCD3-218ENST00000493430 DDX56Q9NY93 547 aaKnown RBP3.78□□□□□ -1.8
PTCD3-218ENST00000493430 POLKQ9UBT6 870 aa3.78□□□□□ -1.8
PTCD3-218ENST00000493430 AFF4Q9UHB7 1163 aaKnown RBP3.78□□□□□ -1.8
PTCD3-218ENST00000493430 STEAP1Q9UHE8 339 aa3.78□□□□□ -1.8
PTCD3-218ENST00000493430 ASAP1Q9ULH1 1129 aa3.78□□□□□ -1.8
PTCD3-218ENST00000493430 TPCN1Q9ULQ1 816 aa3.78□□□□□ -1.8
PTCD3-218ENST00000493430 FZD4Q9ULV1 537 aa3.78□□□□□ -1.8
PTCD3-218ENST00000493430 KDRP35968 1356 aa3.77□□□□□ -1.81
PTCD3-218ENST00000493430 NINLQ9Y2I6 1382 aa3.77□□□□□ -1.81
PTCD3-218ENST00000493430 AGPSO00116 658 aa3.77□□□□□ -1.81
PTCD3-218ENST00000493430 RAB27BO00194 218 aa3.77□□□□□ -1.81
PTCD3-218ENST00000493430 INPPL1O15357 1258 aa3.77□□□□□ -1.81
PTCD3-218ENST00000493430 SMAD6O43541 496 aaKnown RBP3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms