RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 ABLIM2Q6H8Q1 611 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 SRLQ86TD4 932 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 RASGRP3Q8IV61 690 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 UEVLDQ8IX04 471 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 FAM186BQ8IYM0 893 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 OR2C3Q8N628 320 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 LINC01465Q8N7H1 131 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 NANOGP1Q8N7R0 232 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 RNF152Q8N8N0 203 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 OVCA2Q8WZ82 227 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 MUL1Q969V5 352 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 EDC3Q96F86 508 aaKnown RBP2.5□□□□□ -2.01
HMGB1-208ENST00000490788 SELENOOQ9BVL4 669 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 TRIM2Q9C040 744 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 ARNT2Q9HBZ2 717 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 HELLSQ9NRZ9 838 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 TM7SF3Q9NS93 570 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 GJB4Q9NTQ9 266 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 FBXO28Q9NVF7 368 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 TRNAU1APQ9NX07 287 aaKnown RBP2.5□□□□□ -2.01
HMGB1-208ENST00000490788 TUBA8Q9NY65 449 aaPredicted RBP2.5□□□□□ -2.01
HMGB1-208ENST00000490788 RGL1Q9NZL6 768 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 ZNF70Q9UC06 446 aaPredicted RBP2.5□□□□□ -2.01
HMGB1-208ENST00000490788 IPO11Q9UI26 975 aaKnown RBP2.5□□□□□ -2.01
HMGB1-208ENST00000490788 FZD4Q9ULV1 537 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 PHTF1Q9UMS5 762 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 MAGED2Q9UNF1 606 aaPredicted RBP2.5□□□□□ -2.01
HMGB1-208ENST00000490788 SCAF8Q9UPN6 1271 aaKnown RBP2.5□□□□□ -2.01
HMGB1-208ENST00000490788 PCDHB2Q9Y5E7 798 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 EHBP1L1Q8N3D4 1523 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 GPATCH8Q9UKJ3 1502 aaKnown RBP2.5□□□□□ -2.01
HMGB1-208ENST00000490788 NUP153P49790 1475 aaKnown RBP2.5□□□□□ -2.01
HMGB1-208ENST00000490788 PRAG1Q86YV5 1406 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 COL22A1Q8NFW1 1626 aaPredicted RBP2.5□□□□□ -2.01
HMGB1-208ENST00000490788 CICQ96RK0 1608 aaPredicted RBP2.5□□□□□ -2.01
HMGB1-208ENST00000490788 TNRC18O15417 2968 aaPredicted RBP2.49□□□□□ -2.01
HMGB1-208ENST00000490788 PCNTO95613 3336 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 ZNF521Q96K83 1311 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 PNMA6EA0A0J9YXQ4 647 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 ADAMTS3O15072 1205 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 INPPL1O15357 1258 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 NCK2O43639 380 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 PRAMEF2O60811 474 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 ARP10275 920 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 PECAM1P16284 738 aaPredicted RBP2.49□□□□□ -2.01
HMGB1-208ENST00000490788 EGR1P18146 543 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 ATP5F1P24539 256 aaPredicted RBP2.49□□□□□ -2.01
HMGB1-208ENST00000490788 MST1P26927 711 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 DUSP1P28562 367 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 SLC8A1P32418 973 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 TECP42680 631 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 CPA2P48052 419 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 ALDH18A1P54886 795 aaKnown RBP2.49□□□□□ -2.01
HMGB1-208ENST00000490788 RPS13P62277 151 aaKnown RBP2.49□□□□□ -2.01
HMGB1-208ENST00000490788 RAE1P78406 368 aaKnown RBP2.49□□□□□ -2.01
HMGB1-208ENST00000490788 HSF1Q00613 529 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 ID2Q02363 134 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 SLC14A1Q13336 389 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 STIM1Q13586 685 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 DNASE1L3Q13609 305 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 ATP1A4Q13733 1029 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 KCNJ12Q14500 433 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 STARD3Q14849 445 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 BRD3Q15059 726 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 ETFDHQ16134 617 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 SLC9C1Q4G0N8 1177 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 AASDHQ4L235 1098 aaPredicted RBP2.49□□□□□ -2.01
HMGB1-208ENST00000490788 TMTC4Q5T4D3 741 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 RAP1GAP2Q684P5 730 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 GRHL2Q6ISB3 625 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 CCDC144NLQ6NUI1 221 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 SHC4Q6S5L8 630 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 NOL8Q76FK4 1167 aaKnown RBP2.49□□□□□ -2.01
HMGB1-208ENST00000490788 MRPL10Q7Z7H8 261 aaKnown RBP2.49□□□□□ -2.01
HMGB1-208ENST00000490788 ANKRD13BQ86YJ7 626 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 CCDC146Q8IYE0 955 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 SYTL1Q8IYJ3 562 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 GLIS1Q8NBF1 620 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 WDR60Q8WVS4 1066 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 PIGKQ92643 395 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 AKAP1Q92667 903 aaKnown RBP eCLIP2.49□□□□□ -2.01
HMGB1-208ENST00000490788 KAT2BQ92831 832 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 MAP4K1Q92918 833 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 ELAC2Q9BQ52 826 aaKnown RBP2.49□□□□□ -2.01
HMGB1-208ENST00000490788 SENP7Q9BQF6 1050 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 NUDT22Q9BRQ3 303 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 POLR3GLQ9BT43 218 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 RNF26Q9BY78 433 aaPredicted RBP2.49□□□□□ -2.01
HMGB1-208ENST00000490788 VPS16Q9H269 839 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 SAP30LQ9HAJ7 183 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 NLRC4Q9NPP4 1024 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 VPS45Q9NRW7 570 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 GAR1Q9NY12 217 aaKnown RBP2.49□□□□□ -2.01
HMGB1-208ENST00000490788 CA14Q9ULX7 337 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 SLC8A2Q9UPR5 921 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 LRCH1Q9Y2L9 728 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 PCDHGB2Q9Y5G2 931 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 ADGRL3Q9HAR2 1447 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 CNTNAP1P78357 1384 aa2.49□□□□□ -2.01
HMGB1-208ENST00000490788 CUL9Q8IWT3 2517 aa2.48□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms