RNA–Protein interactions for RNA: ENST00000488864.5

CHD1L-208, Transcript of chromodomain helicase DNA binding protein 1 like, human

TSL 2

Gene CHD1L, Length 2,415 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD1L-208	ENST00000488864	TBC1D4	O60343	1298 aa		13.73	□□□□□ -0.21
CHD1L-208	ENST00000488864	SMIM24	O75264	130 aa		13.73	□□□□□ -0.21
CHD1L-208	ENST00000488864	CAPN15	O75808	1086 aa		13.73	□□□□□ -0.21
CHD1L-208	ENST00000488864	UROD	P06132	367 aa		13.73	□□□□□ -0.21
CHD1L-208	ENST00000488864	SETSIP	P0DME0	302 aa		13.73	□□□□□ -0.21
CHD1L-208	ENST00000488864	MAN1A1	P33908	653 aa		13.73	□□□□□ -0.21
CHD1L-208	ENST00000488864	BMPR1A	P36894	532 aa		13.73	□□□□□ -0.21
CHD1L-208	ENST00000488864	GRIK1	P39086	918 aa		13.73	□□□□□ -0.21
CHD1L-208	ENST00000488864	ADIG	Q0VDE8	80 aa		13.73	□□□□□ -0.21
CHD1L-208	ENST00000488864	KLF1	Q13351	362 aa	Predicted RBP	13.73	□□□□□ -0.21
CHD1L-208	ENST00000488864	FASTKD3	Q14CZ7	662 aa	Known RBP	13.73	□□□□□ -0.21
CHD1L-208	ENST00000488864	P3H1	Q32P28	736 aa		13.73	□□□□□ -0.21
CHD1L-208	ENST00000488864	AP1AR	Q63HQ0	302 aa		13.73	□□□□□ -0.21
CHD1L-208	ENST00000488864	C4orf50	Q6ZRC1	276 aa		13.73	□□□□□ -0.21
CHD1L-208	ENST00000488864	FAM183BP	Q6ZVS7	135 aa		13.73	□□□□□ -0.21
CHD1L-208	ENST00000488864	RELL1	Q8IUW5	271 aa		13.73	□□□□□ -0.21
CHD1L-208	ENST00000488864	GLIS1	Q8NBF1	620 aa		13.73	□□□□□ -0.21
CHD1L-208	ENST00000488864	GPR152	Q8TDT2	470 aa		13.73	□□□□□ -0.21
CHD1L-208	ENST00000488864	UCMA	Q8WVF2	138 aa		13.73	□□□□□ -0.21
CHD1L-208	ENST00000488864	TRIM11	Q96F44	468 aa		13.73	□□□□□ -0.21
CHD1L-208	ENST00000488864	VCPIP1	Q96JH7	1222 aa		13.73	□□□□□ -0.21
CHD1L-208	ENST00000488864	MCEE	Q96PE7	176 aa		13.73	□□□□□ -0.21
CHD1L-208	ENST00000488864	TSC22D3	Q99576	134 aa		13.73	□□□□□ -0.21
CHD1L-208	ENST00000488864	CLSTN3	Q9BQT9	956 aa		13.73	□□□□□ -0.21
CHD1L-208	ENST00000488864	CRISPLD1	Q9H336	500 aa		13.73	□□□□□ -0.21
CHD1L-208	ENST00000488864	CYLD	Q9NQC7	956 aa		13.73	□□□□□ -0.21
CHD1L-208	ENST00000488864	MTRR	Q9UBK8	725 aa		13.73	□□□□□ -0.21
CHD1L-208	ENST00000488864	WDR27	A2RRH5	827 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	XPO1	O14980	1071 aa	Known RBP	13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	PRPF4	O43172	522 aa	Known RBP eCLIP	13.72	□□□□□ -0.21	5e-9	■■■□□ 16.8
CHD1L-208	ENST00000488864	PAPSS1	O43252	624 aa	Predicted RBP	13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	NEFH	P12036	1026 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	ACADS	P16219	412 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	ALDH3A1	P30838	453 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	SESN3	P58005	492 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	MRPS35	P82673	323 aa	Known RBP	13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	ROR1	Q01973	937 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	DSG1	Q02413	1049 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	DDR2	Q16832	855 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	CMPK2	Q5EBM0	449 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	FAM102A	Q5T9C2	384 aa	Predicted RBP	13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	DNAJC24	Q6P3W2	148 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	RGS9BP	Q6ZS82	235 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	EMC1	Q8N766	993 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	LRRC8C	Q8TDW0	803 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	SLC4A5	Q9BY07	1137 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	YBX2	Q9Y2T7	364 aa	Known RBP	13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	MTMR11	A4FU01	709 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	TRAFD1	O14545	582 aa	Predicted RBP	13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	SNUPN	O95149	360 aa	Known RBP	13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	ZSCAN5DP	P0CG00	497 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	KRT15	P19012	456 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	KLRC2	P26717	231 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	DUSP4	Q13115	394 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	PLEKHA7	Q6IQ23	1121 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	DCUN1D2	Q6PH85	259 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	SLC30A9	Q6PML9	568 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	NLRP9	Q7RTR0	991 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	TMC7	Q7Z402	723 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	TMEM110	Q86TL2	294 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	MTDH	Q86UE4	582 aa	Known RBP	13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	TEKT4	Q8WW24	435 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	MAIP1	Q8WWC4	291 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	LRRC4	Q9HBW1	653 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	NPHS2	Q9NP85	383 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	METTL5	Q9NRN9	209 aa	Known RBP	13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	PARVA	Q9NVD7	372 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	NMRK1	Q9NWW6	199 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	ZFP69B	Q9UJL9	534 aa		13.72	□□□□□ -0.21
CHD1L-208	ENST00000488864	VNN2	O95498	520 aa		13.71	□□□□□ -0.21
CHD1L-208	ENST00000488864	ABHD2	P08910	425 aa		13.71	□□□□□ -0.21
CHD1L-208	ENST00000488864	PECAM1	P16284	738 aa	Predicted RBP	13.71	□□□□□ -0.21
CHD1L-208	ENST00000488864	CA4	P22748	312 aa		13.71	□□□□□ -0.21
CHD1L-208	ENST00000488864	SP100	P23497	879 aa	Predicted RBP	13.71	□□□□□ -0.21
CHD1L-208	ENST00000488864	PTPN4	P29074	926 aa		13.71	□□□□□ -0.21
CHD1L-208	ENST00000488864	GABRB2	P47870	512 aa		13.71	□□□□□ -0.21
CHD1L-208	ENST00000488864	PAPOLA	P51003	745 aa	Known RBP	13.71	□□□□□ -0.21
CHD1L-208	ENST00000488864	TAS2R40	P59535	323 aa		13.71	□□□□□ -0.21
CHD1L-208	ENST00000488864	GPR17	Q13304	367 aa		13.71	□□□□□ -0.21
CHD1L-208	ENST00000488864	LBR	Q14739	615 aa	Known RBP	13.71	□□□□□ -0.21
CHD1L-208	ENST00000488864	NFE2	Q16621	373 aa	Predicted RBP	13.71	□□□□□ -0.21
CHD1L-208	ENST00000488864	CTC1	Q2NKJ3	1217 aa		13.71	□□□□□ -0.21
CHD1L-208	ENST00000488864	MGAT5B	Q3V5L5	792 aa		13.71	□□□□□ -0.21
CHD1L-208	ENST00000488864	RNF220	Q5VTB9	566 aa		13.71	□□□□□ -0.21
CHD1L-208	ENST00000488864	SLC8B1	Q6J4K2	584 aa		13.71	□□□□□ -0.21
CHD1L-208	ENST00000488864	RIBC1	Q8N443	379 aa	Predicted RBP	13.71	□□□□□ -0.21
CHD1L-208	ENST00000488864	ZCCHC9	Q8N567	271 aa	Known RBP	13.71	□□□□□ -0.21
CHD1L-208	ENST00000488864	CCDC89	Q8N998	374 aa		13.71	□□□□□ -0.21
CHD1L-208	ENST00000488864	JOSD2	Q8TAC2	188 aa		13.71	□□□□□ -0.21
CHD1L-208	ENST00000488864	SCAMP5	Q8TAC9	235 aa		13.71	□□□□□ -0.21
CHD1L-208	ENST00000488864	NRG4	Q8WWG1	115 aa		13.71	□□□□□ -0.21
CHD1L-208	ENST00000488864	FAM136A	Q96C01	138 aa		13.71	□□□□□ -0.21
CHD1L-208	ENST00000488864	SEPT5	Q99719	369 aa	Predicted RBP	13.71	□□□□□ -0.21
CHD1L-208	ENST00000488864	HERC2P3	Q9BVR0	1158 aa		13.71	□□□□□ -0.21
CHD1L-208	ENST00000488864	CADM1	Q9BY67	442 aa	Known RBP	13.71	□□□□□ -0.21
CHD1L-208	ENST00000488864	TLE6	Q9H808	572 aa		13.71	□□□□□ -0.21
CHD1L-208	ENST00000488864	DMAP1	Q9NPF5	467 aa	Predicted RBP	13.71	□□□□□ -0.21
CHD1L-208	ENST00000488864	AVEN	Q9NQS1	362 aa	Predicted RBP	13.71	□□□□□ -0.21
CHD1L-208	ENST00000488864	PAPOLB	Q9NRJ5	636 aa	Known RBP	13.71	□□□□□ -0.21
CHD1L-208	ENST00000488864	MRPL17	Q9NRX2	175 aa	Known RBP	13.71	□□□□□ -0.21

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