RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	LOC400499	M0QZD8	3231 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	ATP8B3	O60423	1300 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520		A0A1W2PQC6	194 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	GOLGA6L6	A8MZA4	724 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	SGK1	O00141	431 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	LEFTY2	O00292	366 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	TEX33	O43247	280 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	ATP2C2	O75185	946 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	ALDH1A2	O94788	518 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	ABL1	P00519	1130 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	CFI	P05156	583 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	BMP4	P12644	408 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	PTPN1	P18031	435 aa	Known RBP	9.17	□□□□□ -0.94
USP4-213	ENST00000488520	NDST1	P52848	882 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	POLR2F	P61218	127 aa	Known RBP	9.17	□□□□□ -0.94
USP4-213	ENST00000488520	SIM1	P81133	766 aa	Predicted RBP	9.17	□□□□□ -0.94
USP4-213	ENST00000488520	KDSR	Q06136	332 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	MESP2	Q0VG99	397 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	KCNMA1	Q12791	1236 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	LMAN2	Q12907	356 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	GAB4	Q2WGN9	574 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	ZNF394	Q53GI3	561 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	TMEM270	Q6UE05	265 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	LPCAT2	Q7L5N7	544 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	GAS2L3	Q86XJ1	694 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	LMO3	Q8TAP4	145 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	HMGB4	Q8WW32	186 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	ELMO3	Q96BJ8	720 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	ERLEC1	Q96DZ1	483 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	ERGIC2	Q96RQ1	377 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	SYT15	Q9BQS2	421 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	MRPL45	Q9BRJ2	306 aa	Known RBP	9.17	□□□□□ -0.94
USP4-213	ENST00000488520	GTPBP2	Q9BX10	602 aa	Known RBP	9.17	□□□□□ -0.94
USP4-213	ENST00000488520	STK33	Q9BYT3	514 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	XPO4	Q9C0E2	1151 aa	Known RBP	9.17	□□□□□ -0.94
USP4-213	ENST00000488520	ZMYND15	Q9H091	742 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	HSD3B7	Q9H2F3	369 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	SLC32A1	Q9H598	525 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	SMYD3	Q9H7B4	428 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	APOBEC3G	Q9HC16	384 aa	Known RBP	9.17	□□□□□ -0.94
USP4-213	ENST00000488520	CISH	Q9NSE2	258 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	SMPD4	Q9NXE4	827 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	MBD1	Q9UIS9	605 aa	Predicted RBP	9.17	□□□□□ -0.94
USP4-213	ENST00000488520	NEUROG3	Q9Y4Z2	214 aa		9.17	□□□□□ -0.94
USP4-213	ENST00000488520	GPC6	Q9Y625	555 aa	Predicted RBP	9.17	□□□□□ -0.94
USP4-213	ENST00000488520	GCN1	Q92616	2671 aa	Known RBP	9.17	□□□□□ -0.94
USP4-213	ENST00000488520	CELSR3	Q9NYQ7	3312 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	URB1	O60287	2271 aa	Known RBP	9.16	□□□□□ -0.94
USP4-213	ENST00000488520	RNF225	M0QZC1	329 aa	Predicted RBP	9.16	□□□□□ -0.94
USP4-213	ENST00000488520	TNFRSF10B	O14763	440 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	GABRD	O14764	452 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	MED7	O43513	233 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	APOD	P05090	189 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	CYP17A1	P05093	508 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	FAM157B	P0CG42	384 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	UCHL3	P15374	230 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	CD19	P15391	556 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	BDNF	P23560	247 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	ITPKA	P23677	461 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	LMO2	P25791	158 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	GRIK1	P39086	918 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	P2RY2	P41231	377 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	STAT1	P42224	750 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	ATXN3	P54252	364 aa	Predicted RBP	9.16	□□□□□ -0.94
USP4-213	ENST00000488520	PSMC1	P62191	440 aa	Known RBP	9.16	□□□□□ -0.94
USP4-213	ENST00000488520	FAM193A	P78312	1265 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	MRPS21	P82921	87 aa	Known RBP	9.16	□□□□□ -0.94
USP4-213	ENST00000488520	CYP27A1	Q02318	531 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	SAMD5	Q5TGI4	173 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	ACOT1	Q86TX2	421 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	C12orf40	Q86WS4	652 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	SYT12	Q8IV01	421 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	ANKMY2	Q8IV38	441 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	ARHGEF19	Q8IW93	802 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	CRYBG2	Q8N1P7	616 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	CHCHD4	Q8N4Q1	142 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	IL17RC	Q8NAC3	791 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	OR2I1P	Q8NGU4	316 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	CCDC26	Q8TAB7	109 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	OLIG1	Q8TAK6	271 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	CPLX3	Q8WVH0	158 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	SPACA7	Q96KW9	195 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	PNKP	Q96T60	521 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	PKMYT1	Q99640	499 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	EDEM3	Q9BZQ6	932 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	RNF38	Q9H0F5	515 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	ABCB6	Q9NP58	842 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	NLRC4	Q9NPP4	1024 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	ZNHIT6	Q9NWK9	470 aa	Known RBP	9.16	□□□□□ -0.94
USP4-213	ENST00000488520	HESX1	Q9UBX0	185 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	EVL	Q9UI08	416 aa	Predicted RBP	9.16	□□□□□ -0.94
USP4-213	ENST00000488520	ARHGAP26	Q9UNA1	814 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	MSRB2	Q9Y3D2	182 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	IGSF10	Q6WRI0	2623 aa		9.16	□□□□□ -0.94
USP4-213	ENST00000488520	CKAP5	Q14008	2032 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	TCRBV21S2A2	A0A5A6	115 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	TAF4	O00268	1085 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	CILP	O75339	1184 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	PAEP	P09466	180 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	VDR	P11473	427 aa		9.15	□□□□□ -0.94

Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms