RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 DDX6P26196 483 aaKnown RBP eCLIP7.19□□□□□ -1.26
HDAC3-209ENST00000486618 LRPAP1P30533 357 aa7.19□□□□□ -1.26
HDAC3-209ENST00000486618 MCM7P33993 719 aa7.19□□□□□ -1.26
HDAC3-209ENST00000486618 KRT20P35900 424 aa7.19□□□□□ -1.26
HDAC3-209ENST00000486618 CCT6AP40227 531 aaKnown RBP7.19□□□□□ -1.26
HDAC3-209ENST00000486618 DPP6P42658 865 aa7.19□□□□□ -1.26
HDAC3-209ENST00000486618 NPTX2P47972 431 aa7.19□□□□□ -1.26
HDAC3-209ENST00000486618 AARSP49588 968 aaKnown RBP eCLIP7.19□□□□□ -1.26
HDAC3-209ENST00000486618 CYP4F8P98187 520 aa7.19□□□□□ -1.26
HDAC3-209ENST00000486618 SMARCB1Q12824 385 aa7.19□□□□□ -1.26
HDAC3-209ENST00000486618 ORC2Q13416 577 aaPredicted RBP7.19□□□□□ -1.26
HDAC3-209ENST00000486618 NOLC1Q14978 699 aaKnown RBP eCLIP7.19□□□□□ -1.26
HDAC3-209ENST00000486618 KYAT1Q16773 422 aa7.19□□□□□ -1.26
HDAC3-209ENST00000486618 SLC10A6Q3KNW5 377 aa7.19□□□□□ -1.26
HDAC3-209ENST00000486618 MGAT5BQ3V5L5 792 aa7.19□□□□□ -1.26
HDAC3-209ENST00000486618 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.19□□□□□ -1.26
HDAC3-209ENST00000486618 PMS2CLQ68D20 193 aa7.19□□□□□ -1.26
HDAC3-209ENST00000486618 CENPQQ7L2Z9 268 aaPredicted RBP7.19□□□□□ -1.26
HDAC3-209ENST00000486618 DIS3L2Q8IYB7 885 aaKnown RBP7.19□□□□□ -1.26
HDAC3-209ENST00000486618 CPA6Q8N4T0 437 aa7.19□□□□□ -1.26
HDAC3-209ENST00000486618 NAXEQ8NCW5 288 aa7.19□□□□□ -1.26
HDAC3-209ENST00000486618 DEFB124Q8NES8 71 aa7.19□□□□□ -1.26
HDAC3-209ENST00000486618 TSTD1Q8NFU3 115 aa7.19□□□□□ -1.26
HDAC3-209ENST00000486618 RPLP0P6Q8NHW5 317 aa7.19□□□□□ -1.26
HDAC3-209ENST00000486618 FAM81BQ96LP2 452 aa7.19□□□□□ -1.26
HDAC3-209ENST00000486618 SEPT5Q99719 369 aaPredicted RBP7.19□□□□□ -1.26
HDAC3-209ENST00000486618 RUSC1Q9BVN2 902 aa7.19□□□□□ -1.26
HDAC3-209ENST00000486618 NUSAP1Q9BXS6 441 aaKnown RBP7.19□□□□□ -1.26
HDAC3-209ENST00000486618 SLC46A2Q9BY10 475 aa7.19□□□□□ -1.26
HDAC3-209ENST00000486618 ASPSCR1Q9BZE9 553 aa7.19□□□□□ -1.26
HDAC3-209ENST00000486618 TMEM60Q9H2L4 133 aa7.19□□□□□ -1.26
HDAC3-209ENST00000486618 BHMT2Q9H2M3 363 aa7.19□□□□□ -1.26
HDAC3-209ENST00000486618 EBF3Q9H4W6 596 aa7.19□□□□□ -1.26
HDAC3-209ENST00000486618 C17orf75Q9HAS0 396 aa7.19□□□□□ -1.26
HDAC3-209ENST00000486618 NLRC4Q9NPP4 1024 aa7.19□□□□□ -1.26
HDAC3-209ENST00000486618 HPS4Q9NQG7 708 aa7.19□□□□□ -1.26
HDAC3-209ENST00000486618 AASDHPPTQ9NRN7 309 aa7.19□□□□□ -1.26
HDAC3-209ENST00000486618 TDP1Q9NUW8 608 aa7.19□□□□□ -1.26
HDAC3-209ENST00000486618 N6AMT1Q9Y5N5 214 aa7.19□□□□□ -1.26
HDAC3-209ENST00000486618 ABLIM1O14639 778 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 CLDN3O15551 220 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 SOAT2O75908 522 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 LARGE1O95461 756 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 OR52Z1P0C646 297 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 ESRRAP11474 423 aaPredicted RBP7.18□□□□□ -1.26
HDAC3-209ENST00000486618 ODC1P11926 461 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 GJA4P35212 333 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 MATR3P43243 847 aaKnown RBP eCLIP7.18□□□□□ -1.26
HDAC3-209ENST00000486618 PREPP48147 710 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 DHPSP49366 369 aaPredicted RBP7.18□□□□□ -1.26
HDAC3-209ENST00000486618 IRX4P78413 519 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 PPP2R3AQ06190 1150 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 ANKRD1Q15327 319 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 SAFBQ15424 915 aaKnown RBP eCLIP7.18□□□□□ -1.26
HDAC3-209ENST00000486618 ANKRD34AQ69YU3 496 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 TRIM68Q6AZZ1 485 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 ZPBP2Q6X784 338 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 BEND5Q7L4P6 421 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 GALNT5Q7Z7M9 940 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 METTL23Q86XA0 190 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 THEM5Q8N1Q8 247 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 MAB21L3Q8N8X9 362 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 TRIML1Q8N9V2 468 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 SPPL2BQ8TCT7 592 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 FBF1Q8TES7 1133 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 C2orf15Q8WU43 125 aaKnown RBP7.18□□□□□ -1.26
HDAC3-209ENST00000486618 PIGKQ92643 395 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 MRPS31Q92665 395 aaKnown RBP7.18□□□□□ -1.26
HDAC3-209ENST00000486618 ARHGEF2Q92974 986 aaKnown RBP7.18□□□□□ -1.26
HDAC3-209ENST00000486618 CD101Q93033 1021 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 PPM1MQ96MI6 270 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 RAB34Q9BZG1 259 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 SOX17Q9H6I2 414 aaPredicted RBP7.18□□□□□ -1.26
HDAC3-209ENST00000486618 FBRSL1Q9HCM7 1045 aaKnown RBP7.18□□□□□ -1.26
HDAC3-209ENST00000486618 QPCTLQ9NXS2 382 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 SEPT10Q9P0V9 454 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 ANKFY1Q9P2R3 1169 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 DKK3Q9UBP4 350 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 TUBGCP4Q9UGJ1 667 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 ZNF180Q9UJW8 692 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 DSEQ9UL01 958 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 BLOC1S6Q9UL45 172 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 TBX20Q9UMR3 447 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 DNM3Q9UQ16 869 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 ADAMTS20P59510 1910 aa7.18□□□□□ -1.26
HDAC3-209ENST00000486618 MYO18AQ92614 2054 aaKnown RBP7.18□□□□□ -1.26
HDAC3-209ENST00000486618 ZZEF1O43149 2961 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 DSPP15924 2871 aaKnown RBP7.17□□□□□ -1.26
HDAC3-209ENST00000486618 TTC26A0AVF1 554 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 OTOL1A6NHN0 477 aaPredicted RBP7.17□□□□□ -1.26
HDAC3-209ENST00000486618 VSTM5A8MXK1 200 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 UPK3BL1B0FP48 263 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 PATE3B3GLJ2 98 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 UPK3BL2E5RIL1 263 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 SLC16A4O15374 487 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 GSC2O15499 205 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 MEFVO15553 781 aaPredicted RBP7.17□□□□□ -1.26
HDAC3-209ENST00000486618 KATNA1O75449 491 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 B3GALNT1O75752 331 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 ALDH1A2O94788 518 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms