RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 SCP2P22307 547 aa4.45□□□□□ -1.7
VPS41-213ENST00000485955 IL6STP40189 918 aaPredicted RBP4.45□□□□□ -1.7
VPS41-213ENST00000485955 SHC2P98077 582 aa4.45□□□□□ -1.7
VPS41-213ENST00000485955 AAK1Q2M2I8 961 aa4.45□□□□□ -1.7
VPS41-213ENST00000485955 SMTNL2Q2TAL5 461 aa4.45□□□□□ -1.7
VPS41-213ENST00000485955 ODF3L2Q3SX64 289 aa4.45□□□□□ -1.7
VPS41-213ENST00000485955 GLE1Q53GS7 698 aaKnown RBP4.45□□□□□ -1.7
VPS41-213ENST00000485955 HSP90AB2PQ58FF8 381 aa4.45□□□□□ -1.7
VPS41-213ENST00000485955 ARL6IP4Q66PJ3 421 aaKnown RBP4.45□□□□□ -1.7
VPS41-213ENST00000485955 SKAP1Q86WV1 359 aa4.45□□□□□ -1.7
VPS41-213ENST00000485955 PELI3Q8N2H9 469 aa4.45□□□□□ -1.7
VPS41-213ENST00000485955 SLC44A5Q8NCS7 719 aa4.45□□□□□ -1.7
VPS41-213ENST00000485955 DEPTORQ8TB45 409 aa4.45□□□□□ -1.7
VPS41-213ENST00000485955 ZFPM2Q8WW38 1151 aa4.45□□□□□ -1.7
VPS41-213ENST00000485955 PMM1Q92871 262 aa4.45□□□□□ -1.7
VPS41-213ENST00000485955 ABHD14AQ9BUJ0 271 aa4.45□□□□□ -1.7
VPS41-213ENST00000485955 AAMDCQ9H7C9 122 aa4.45□□□□□ -1.7
VPS41-213ENST00000485955 PRDM16Q9HAZ2 1276 aa4.45□□□□□ -1.7
VPS41-213ENST00000485955 CHST12Q9NRB3 414 aa4.45□□□□□ -1.7
VPS41-213ENST00000485955 SLC52A1Q9NWF4 448 aa4.45□□□□□ -1.7
VPS41-213ENST00000485955 UTS2RQ9UKP6 389 aa4.45□□□□□ -1.7
VPS41-213ENST00000485955 EVPLQ92817 2033 aa4.45□□□□□ -1.7
VPS41-213ENST00000485955 A6NNC1 897 aa4.44□□□□□ -1.7
VPS41-213ENST00000485955 NKX2-8O15522 239 aa4.44□□□□□ -1.7
VPS41-213ENST00000485955 PRPF4O43172 522 aaKnown RBP eCLIP4.44□□□□□ -1.7
VPS41-213ENST00000485955 DNPH1O43598 174 aa4.44□□□□□ -1.7
VPS41-213ENST00000485955 RPP40O75818 363 aaKnown RBP4.44□□□□□ -1.7
VPS41-213ENST00000485955 CNTN5O94779 1100 aa4.44□□□□□ -1.7
VPS41-213ENST00000485955 GLP2RO95838 553 aa4.44□□□□□ -1.7
VPS41-213ENST00000485955 NPPBP16860 134 aa4.44□□□□□ -1.7
VPS41-213ENST00000485955 FOXL2P58012 376 aa4.44□□□□□ -1.7
VPS41-213ENST00000485955 CBFBQ13951 182 aa4.44□□□□□ -1.7
VPS41-213ENST00000485955 MAP9Q49MG5 647 aa4.44□□□□□ -1.7
VPS41-213ENST00000485955 PIK3CD-AS1Q5SR53 167 aa4.44□□□□□ -1.7
VPS41-213ENST00000485955 ASPHD1Q5U4P2 390 aa4.44□□□□□ -1.7
VPS41-213ENST00000485955 ANKRD40Q6AI12 368 aa4.44□□□□□ -1.7
VPS41-213ENST00000485955 WDR93Q6P2C0 686 aa4.44□□□□□ -1.7
VPS41-213ENST00000485955 SLC39A5Q6ZMH5 540 aa4.44□□□□□ -1.7
VPS41-213ENST00000485955 C9orf47Q6ZRZ4 202 aa4.44□□□□□ -1.7
VPS41-213ENST00000485955 ADGRF3Q8IZF5 1079 aa4.44□□□□□ -1.7
VPS41-213ENST00000485955 OR52N4Q8NGI2 321 aa4.44□□□□□ -1.7
VPS41-213ENST00000485955 MUL1Q969V5 352 aa4.44□□□□□ -1.7
VPS41-213ENST00000485955 FAR2Q96K12 515 aa4.44□□□□□ -1.7
VPS41-213ENST00000485955 TNIP3Q96KP6 325 aa4.44□□□□□ -1.7
VPS41-213ENST00000485955 IL21RQ9HBE5 538 aa4.44□□□□□ -1.7
VPS41-213ENST00000485955 ERVK-5Q9HDB9 667 aa4.44□□□□□ -1.7
VPS41-213ENST00000485955 MTPAPQ9NVV4 582 aaKnown RBP eCLIP4.44□□□□□ -1.7
VPS41-213ENST00000485955 IPO11Q9UI26 975 aaKnown RBP4.44□□□□□ -1.7
VPS41-213ENST00000485955 CDC23Q9UJX2 597 aa4.44□□□□□ -1.7
VPS41-213ENST00000485955 AQP12BA6NM10 295 aa4.43□□□□□ -1.7
VPS41-213ENST00000485955 IKBKBO14920 756 aa4.43□□□□□ -1.7
VPS41-213ENST00000485955 OAZ2O95190 189 aa4.43□□□□□ -1.7
VPS41-213ENST00000485955 FAM3BP58499 235 aaPredicted RBP4.43□□□□□ -1.7
VPS41-213ENST00000485955 NANOS2P60321 138 aaKnown RBP4.43□□□□□ -1.7
VPS41-213ENST00000485955 RPL15P61313 204 aaKnown RBP4.43□□□□□ -1.7
VPS41-213ENST00000485955 RAPGEF1Q13905 1077 aa4.43□□□□□ -1.7
VPS41-213ENST00000485955 INPP5JQ15735 1006 aaPredicted RBP4.43□□□□□ -1.7
VPS41-213ENST00000485955 KIAA1755Q5JYT7 1200 aa4.43□□□□□ -1.7
VPS41-213ENST00000485955 DGKKQ5KSL6 1271 aa4.43□□□□□ -1.7
VPS41-213ENST00000485955 CCDC181Q5TID7 509 aa4.43□□□□□ -1.7
VPS41-213ENST00000485955 RINT1Q6NUQ1 792 aa4.43□□□□□ -1.7
VPS41-213ENST00000485955 RFX8Q6ZV50 586 aa4.43□□□□□ -1.7
VPS41-213ENST00000485955 B4GALNT4Q76KP1 1039 aa4.43□□□□□ -1.7
VPS41-213ENST00000485955 TRABD2AQ86V40 505 aa4.43□□□□□ -1.7
VPS41-213ENST00000485955 SYTL1Q8IYJ3 562 aa4.43□□□□□ -1.7
VPS41-213ENST00000485955 SRFBP1Q8NEF9 429 aaKnown RBP4.43□□□□□ -1.7
VPS41-213ENST00000485955 OR1N1Q8NGS0 311 aa4.43□□□□□ -1.7
VPS41-213ENST00000485955 KAT2AQ92830 837 aa4.43□□□□□ -1.7
VPS41-213ENST00000485955 CCDC136Q96JN2 1154 aa4.43□□□□□ -1.7
VPS41-213ENST00000485955 NLRP4Q96MN2 994 aa4.43□□□□□ -1.7
VPS41-213ENST00000485955 PRPF18Q99633 342 aaKnown RBP4.43□□□□□ -1.7
VPS41-213ENST00000485955 MECRQ9BV79 373 aa4.43□□□□□ -1.7
VPS41-213ENST00000485955 MLXIPQ9HAP2 919 aa4.43□□□□□ -1.7
VPS41-213ENST00000485955 DECR2Q9NUI1 292 aa4.43□□□□□ -1.7
VPS41-213ENST00000485955 SLC12A4Q9UP95 1085 aa4.43□□□□□ -1.7
VPS41-213ENST00000485955 TRIP12Q14669 1992 aaPredicted RBP4.43□□□□□ -1.7
VPS41-213ENST00000485955 LMTK3Q96Q04 1460 aa4.43□□□□□ -1.7
VPS41-213ENST00000485955 KIF28PB7ZC32 967 aa4.42□□□□□ -1.7
VPS41-213ENST00000485955 ALDOCP09972 364 aaKnown RBP4.42□□□□□ -1.7
VPS41-213ENST00000485955 CHRNB1P11230 501 aa4.42□□□□□ -1.7
VPS41-213ENST00000485955 IGFBP2P18065 325 aa4.42□□□□□ -1.7
VPS41-213ENST00000485955 TGM2P21980 687 aa4.42□□□□□ -1.7
VPS41-213ENST00000485955 CCKARP32238 428 aa4.42□□□□□ -1.7
VPS41-213ENST00000485955 PPM1AP35813 382 aa4.42□□□□□ -1.7
VPS41-213ENST00000485955 ALDH7A1P49419 539 aaKnown RBP4.42□□□□□ -1.7
VPS41-213ENST00000485955 ALDH18A1P54886 795 aaKnown RBP4.42□□□□□ -1.7
VPS41-213ENST00000485955 TAS2R50P59544 299 aa4.42□□□□□ -1.7
VPS41-213ENST00000485955 KRTAP10-9P60411 292 aa4.42□□□□□ -1.7
VPS41-213ENST00000485955 CKAP5Q14008 2032 aa4.42□□□□□ -1.7
VPS41-213ENST00000485955 DLGAP5Q15398 846 aa4.42□□□□□ -1.7
VPS41-213ENST00000485955 ZNF549Q6P9A3 640 aa4.42□□□□□ -1.7
VPS41-213ENST00000485955 FAM186BQ8IYM0 893 aa4.42□□□□□ -1.7
VPS41-213ENST00000485955 FAM47BQ8NA70 645 aa4.42□□□□□ -1.7
VPS41-213ENST00000485955 STYXQ8WUJ0 223 aa4.42□□□□□ -1.7
VPS41-213ENST00000485955 KRTAP1-5Q9BYS1 174 aa4.42□□□□□ -1.7
VPS41-213ENST00000485955 CCDC134Q9H6E4 229 aa4.42□□□□□ -1.7
VPS41-213ENST00000485955 RAB21Q9UL25 225 aa4.42□□□□□ -1.7
VPS41-213ENST00000485955 LAMP3Q9UQV4 416 aa4.42□□□□□ -1.7
VPS41-213ENST00000485955 ZBTB1Q9Y2K1 713 aa4.42□□□□□ -1.7
VPS41-213ENST00000485955 ASNA1O43681 348 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms