RNA–Protein interactions for RNA: ENST00000477573.1

RTFDC1-207, Transcript of Protein RTF2 homolog, humanhuman

TSL 1 (best)

Gene RTFDC1, Length 2,193 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-207ENST00000477573 PRUNE1Q86TP1 453 aa13□□□□□ -0.33
RTFDC1-207ENST00000477573 SENP7Q9BQF6 1050 aa13□□□□□ -0.33
RTFDC1-207ENST00000477573 IER2Q9BTL4 223 aa13□□□□□ -0.33
RTFDC1-207ENST00000477573 ARHGEF4Q9NR80 690 aa13□□□□□ -0.33
RTFDC1-207ENST00000477573 GDAP2Q9NXN4 497 aa13□□□□□ -0.33
RTFDC1-207ENST00000477573 KANSL3Q9P2N6 904 aa13□□□□□ -0.33
RTFDC1-207ENST00000477573 SUCOQ9UBS9 1254 aaKnown RBP13□□□□□ -0.33
RTFDC1-207ENST00000477573 AP4S1Q9Y587 144 aa13□□□□□ -0.33
RTFDC1-207ENST00000477573 PCDHB13Q9Y5F0 798 aa13□□□□□ -0.33
RTFDC1-207ENST00000477573 TEX51A0A1B0GUA7 166 aa13□□□□□ -0.33
RTFDC1-207ENST00000477573 GOLGA8JA6NMD2 632 aa13□□□□□ -0.33
RTFDC1-207ENST00000477573 ADM5C9JUS6 153 aa13□□□□□ -0.33
RTFDC1-207ENST00000477573 EPHB6O15197 1021 aa13□□□□□ -0.33
RTFDC1-207ENST00000477573 MSI1O43347 362 aaKnown RBP13□□□□□ -0.33
RTFDC1-207ENST00000477573 BMPR1AP36894 532 aa13□□□□□ -0.33
RTFDC1-207ENST00000477573 GNL1P36915 607 aaPredicted RBP13□□□□□ -0.33
RTFDC1-207ENST00000477573 TSPY1Q01534 308 aa13□□□□□ -0.33
RTFDC1-207ENST00000477573 PTK2Q05397 1052 aa13□□□□□ -0.33
RTFDC1-207ENST00000477573 PPATQ06203 517 aa13□□□□□ -0.33
RTFDC1-207ENST00000477573 SMARCB1Q12824 385 aa13□□□□□ -0.33
RTFDC1-207ENST00000477573 IRF5Q13568 498 aa13□□□□□ -0.33
RTFDC1-207ENST00000477573 OASLQ15646 514 aaKnown RBP13□□□□□ -0.33
RTFDC1-207ENST00000477573 PLEKHG4Q58EX7 1191 aa13□□□□□ -0.33
RTFDC1-207ENST00000477573 IYDQ6PHW0 289 aa13□□□□□ -0.33
RTFDC1-207ENST00000477573 CENPUQ71F23 418 aa13□□□□□ -0.33
RTFDC1-207ENST00000477573 FRMD5Q7Z6J6 570 aa13□□□□□ -0.33
RTFDC1-207ENST00000477573 TRIM59Q8IWR1 403 aa13□□□□□ -0.33
RTFDC1-207ENST00000477573 FAM178BQ8IXR5 827 aa13□□□□□ -0.33
RTFDC1-207ENST00000477573 HM13Q8TCT9 377 aa13□□□□□ -0.33
RTFDC1-207ENST00000477573 TXNDC15Q96J42 360 aa13□□□□□ -0.33
RTFDC1-207ENST00000477573 INO80BQ9C086 356 aaPredicted RBP13□□□□□ -0.33
RTFDC1-207ENST00000477573 MMRN2Q9H8L6 949 aa13□□□□□ -0.33
RTFDC1-207ENST00000477573 WDR6Q9NNW5 1121 aaKnown RBP13□□□□□ -0.33
RTFDC1-207ENST00000477573 AVENQ9NQS1 362 aaPredicted RBP13□□□□□ -0.33
RTFDC1-207ENST00000477573 WRAP73Q9P2S5 460 aaPredicted RBP13□□□□□ -0.33
RTFDC1-207ENST00000477573 FBXO40Q9UH90 709 aa13□□□□□ -0.33
RTFDC1-207ENST00000477573 TK2O00142 265 aa12.99□□□□□ -0.33
RTFDC1-207ENST00000477573 RNF103O00237 685 aa12.99□□□□□ -0.33
RTFDC1-207ENST00000477573 CCRL2O00421 344 aa12.99□□□□□ -0.33
RTFDC1-207ENST00000477573 BET1O15155 118 aa12.99□□□□□ -0.33
RTFDC1-207ENST00000477573 SHOXO15266 292 aa12.99□□□□□ -0.33
RTFDC1-207ENST00000477573 KLHL41O60662 606 aa12.99□□□□□ -0.33
RTFDC1-207ENST00000477573 S100A6P06703 90 aa12.99□□□□□ -0.33
RTFDC1-207ENST00000477573 PTGIRP43119 386 aa12.99□□□□□ -0.33
RTFDC1-207ENST00000477573 ALDH1A3P47895 512 aa12.99□□□□□ -0.33
RTFDC1-207ENST00000477573 ECT2LQ008S8 904 aa12.99□□□□□ -0.33
RTFDC1-207ENST00000477573 ITGADQ13349 1161 aa12.99□□□□□ -0.33
RTFDC1-207ENST00000477573 UBAP2Q5T6F2 1119 aaKnown RBP12.99□□□□□ -0.33
RTFDC1-207ENST00000477573 FAM171BQ6P995 826 aa12.99□□□□□ -0.33
RTFDC1-207ENST00000477573 PADI6Q6TGC4 694 aa12.99□□□□□ -0.33
RTFDC1-207ENST00000477573 ERO1BQ86YB8 467 aa12.99□□□□□ -0.33
RTFDC1-207ENST00000477573 C4orf19Q8IY42 314 aa12.99□□□□□ -0.33
RTFDC1-207ENST00000477573 RBM15BQ8NDT2 890 aaKnown RBP12.99□□□□□ -0.33
RTFDC1-207ENST00000477573 TPCN2Q8NHX9 752 aa12.99□□□□□ -0.33
RTFDC1-207ENST00000477573 ALPK1Q96QP1 1244 aa12.99□□□□□ -0.33
RTFDC1-207ENST00000477573 C1orf50Q9BV19 199 aa12.99□□□□□ -0.33
RTFDC1-207ENST00000477573 SLC2A11Q9BYW1 496 aa12.99□□□□□ -0.33
RTFDC1-207ENST00000477573 FARSBQ9NSD9 589 aaKnown RBP12.99□□□□□ -0.33
RTFDC1-207ENST00000477573 WDR90Q96KV7 1748 aa12.99□□□□□ -0.33
RTFDC1-207ENST00000477573 CAPN8A6NHC0 703 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 EVPLLA8MZ36 301 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 H3BRJ5 948 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 ZBTB39O15060 712 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 SLC16A3O15427 465 aaKnown RBP12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 ZW10O43264 779 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 CCNT2O60583 730 aaKnown RBP12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 SNAP91O60641 907 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 TTC4O95801 387 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 PRLP01236 227 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 ATP5BP06576 529 aaKnown RBP12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 YBX3P16989 372 aaKnown RBP eCLIP12.98□□□□□ -0.333e-7■■■□□ 15.2
RTFDC1-207ENST00000477573 SRP54P61011 504 aaKnown RBP12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 PSMC5P62195 406 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 CETN1Q12798 172 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 CALCOCO2Q13137 446 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 LAPTM5Q13571 262 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 ALCAMQ13740 583 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 HIC1Q14526 733 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 PPM1LQ5SGD2 360 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 ODR4Q5SWX8 454 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 RARS2Q5T160 578 aaKnown RBP12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 RNF19BQ6ZMZ0 732 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 AFAP1L2Q8N4X5 818 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 ASCC1Q8N9N2 400 aaKnown RBP12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 PDPRQ8NCN5 879 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 DNERQ8NFT8 737 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 OR10Z1Q8NGY1 313 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 PYDC1Q8WXC3 89 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 SPOCK2Q92563 424 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 KRT35Q92764 455 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 CNBD2Q96M20 576 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 NLRP4Q96MN2 994 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 THTPAQ9BU02 230 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 NAALADL1Q9UQQ1 740 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 INPP5FQ9Y2H2 1132 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 PCDHA3Q9Y5H8 950 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 A6NL46 340 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 TAF4O00268 1085 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 CXCL11O14625 94 aa12.98□□□□□ -0.33
RTFDC1-207ENST00000477573 RNASEH2AO75792 299 aaKnown RBP12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms