RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 RIBC2Q9H4K1 309 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 TASP1Q9H6P5 420 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 ARFGAP3Q9NP61 516 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 PNPLA8Q9NP80 782 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 DDX28Q9NUL7 540 aaKnown RBP3.59□□□□□ -1.83
UBR3-208ENST00000474426 HYPKQ9NX55 129 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 SMPD3Q9NY59 655 aaPredicted RBP3.59□□□□□ -1.83
UBR3-208ENST00000474426 USP21Q9UK80 565 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 PCDHGA7Q9Y5G6 932 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 PCDHGA6Q9Y5G7 932 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 PCDHA3Q9Y5H8 950 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 GPR45Q9Y5Y3 372 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 CLCA3PQ9Y6N3 262 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 TRAV20A0A0B4J274 112 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 LCHNA4D1U4 455 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 H3BQF6 201 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 PGRMC1O00264 195 aaKnown RBP3.59□□□□□ -1.83
UBR3-208ENST00000474426 RASGRF2O14827 1237 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 KCNN4O15554 427 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 RFPL3O75679 317 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 PPM1BO75688 479 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 PROCP04070 461 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 UMPSP11172 480 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 KRT3P12035 628 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 HOXB3P14651 431 aaPredicted RBP3.59□□□□□ -1.83
UBR3-208ENST00000474426 GJA1P17302 382 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 G0S2P27469 103 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 MAP4P27816 1152 aaKnown RBP3.59□□□□□ -1.83
UBR3-208ENST00000474426 GNA11P29992 359 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 THBS2P35442 1172 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 LUMP51884 338 aaPredicted RBP3.59□□□□□ -1.83
UBR3-208ENST00000474426 SRP54P61011 504 aaKnown RBP3.59□□□□□ -1.83
UBR3-208ENST00000474426 HPCAP84074 193 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 CYP24A1Q07973 514 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 LRMPQ12912 555 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 IL24Q13007 206 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 CALCOCO2Q13137 446 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 RPA4Q13156 261 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 FAM110CQ1W6H9 321 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 TBRG1Q3YBR2 411 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 C6orf163Q5TEZ5 329 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 ZNF365Q70YC5 407 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 UTS2BQ765I0 119 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 SIAH1Q8IUQ4 282 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 PYROXD2Q8N2H3 581 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 ARFGAP1Q8N6T3 406 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 SLC24A4Q8NFF2 622 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 PDCD6IPQ8WUM4 868 aaKnown RBP3.59□□□□□ -1.83
UBR3-208ENST00000474426 AFG1LQ8WV93 481 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 RFKQ969G6 155 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 RMND5BQ96G75 393 aaPredicted RBP3.59□□□□□ -1.83
UBR3-208ENST00000474426 ZSCAN31Q96LW9 406 aaPredicted RBP3.59□□□□□ -1.83
UBR3-208ENST00000474426 CCDC43Q96MW1 224 aaKnown RBP3.59□□□□□ -1.83
UBR3-208ENST00000474426 ZNF558Q96NG5 402 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 HAPLN3Q96S86 360 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 CYTH2Q99418 400 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 AGAP2Q99490 1192 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 NUP88Q99567 741 aaPredicted RBP3.59□□□□□ -1.83
UBR3-208ENST00000474426 ST6GALNAC4Q9H4F1 302 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 CERS4Q9HA82 394 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 GGA1Q9UJY5 639 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 ARHGAP26Q9UNA1 814 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 AP4E1Q9UPM8 1137 aa3.59□□□□□ -1.83
UBR3-208ENST00000474426 OR6C75A6NL08 312 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 SOCS6O14544 535 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 MATN3O15232 486 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 NOBOXO60393 691 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 ADH1CP00326 375 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 CSTAP01040 98 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 IGHEP01854 428 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 INHBAP08476 426 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 FBXO45P0C2W1 286 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 MLNP12872 115 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 SLC7A1P30825 629 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 MAGEA4P43358 317 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 CCR5P51681 352 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 CASP6P55212 293 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 MXRA7P84157 204 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 ORC1Q13415 861 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 LSAMPQ13449 338 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 RRS1Q15050 365 aaKnown RBP3.59□□□□□ -1.84
UBR3-208ENST00000474426 NR6A1Q15406 480 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 RTN1Q16799 776 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 ANKRD20A4Q4UJ75 823 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 FNDC3BQ53EP0 1204 aaKnown RBP3.59□□□□□ -1.84
UBR3-208ENST00000474426 RARS2Q5T160 578 aaKnown RBP3.59□□□□□ -1.84
UBR3-208ENST00000474426 MPP7Q5T2T1 576 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 ZNF385CQ66K41 422 aaPredicted RBP3.59□□□□□ -1.84
UBR3-208ENST00000474426 JADE1Q6IE81 842 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 DPY19L2P1Q6NXN4 242 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 CNTN4Q8IWV2 1026 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 PHTF2Q8N3S3 785 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 CELF5Q8N6W0 485 aaKnown RBP3.59□□□□□ -1.84
UBR3-208ENST00000474426 FIBINQ8TAL6 211 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 HMCESQ96FZ2 354 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 SLC4A5Q9BY07 1137 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 POTEKPQ9BYX7 375 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 SAP130Q9H0E3 1048 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 PLEKHA4Q9H4M7 779 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 VCX3AQ9NNX9 186 aa3.59□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms