RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 EIF1ADQ8N9N8 165 aaKnown RBP14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 EPAS1Q99814 870 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 TRIM55Q9BYV6 548 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 MYLK2Q9H1R3 596 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 TMLHEQ9NVH6 421 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 ATAD5Q96QE3 1844 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 TRIP11Q15643 1979 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 SNRPAP09012 282 aaKnown RBP14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 SETSIPP0DME0 302 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 MYL2P10916 166 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 CHRNA4P43681 627 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 SNCBQ16143 134 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 SLC45A4Q5BKX6 768 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 FBXO48Q5FWF7 155 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 TTC7BQ86TV6 843 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 LRRC52Q8N7C0 313 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 PTPRN2Q92932 1015 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 CYP4F12Q9HCS2 524 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 FAM8A1Q9UBU6 413 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 C3orf70A6NLC5 250 aaPredicted RBP14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 ZBTB24O43167 697 aaPredicted RBP14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 ZMPSTE24O75844 475 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 DGKIO75912 1065 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 VAV1P15498 845 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 SERPINB3P29508 390 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 PCK1P35558 622 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 ACADSBP45954 432 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 CTXN3Q4LDR2 81 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 CYB5D1Q6P9G0 228 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 CDHR3Q6ZTQ4 885 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 NLRP9Q7RTR0 991 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 AGAP2Q99490 1192 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 MAN1C1Q9NR34 630 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 PSAT1Q9Y617 370 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 ODC1P11926 461 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 IL4RP24394 825 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 ISLR2Q6UXK2 745 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 ZNF512Q96ME7 567 aaPredicted RBP14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 CHRAC1Q9NRG0 131 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 A8MX80 341 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 CFLARO15519 480 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 LRIG2O94898 1065 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 AMHP03971 560 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 TSPAN8P19075 237 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 SLC12A2P55011 1212 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 CTBP1Q13363 440 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 ZNF460Q14592 562 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 LRRC36Q1X8D7 754 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 PDZD4Q76G19 769 aaPredicted RBP14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 OTOAQ7RTW8 1153 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 ATPAF2Q8N5M1 289 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 ZNF317Q96PQ6 595 aaPredicted RBP14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 FAM167BQ9BTA0 163 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 SLC4A5Q9BY07 1137 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 NT5MQ9NPB1 228 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 SLC38A7Q9NVC3 462 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 GRID1Q9ULK0 1009 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 HTTP42858 3142 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 PPP1R12AO14974 1030 aaPredicted RBP14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 NOS2P35228 1153 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 ADRA1BP35368 520 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 TUBP50607 506 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 PDK1Q15118 436 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 STRA8Q7Z7C7 330 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 TMEM110Q86TL2 294 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 TAC4Q86UU9 113 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 ECHDC2Q86YB7 292 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 ATP2A3Q93084 1043 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 RPRD1AQ96P16 312 aaPredicted RBP14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 OMDQ99983 421 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 TRPC7Q9HCX4 862 aa14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 SARS2Q9NP81 518 aaKnown RBP14.12□□□□□ -0.15
CCDC88A-211ENST00000471947 TCRBV5S1A1TA0A578 114 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 MEI4A8MW99 385 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 ESRRAP11474 423 aaPredicted RBP14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 NR1H3Q13133 447 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 FAM187BQ17R55 369 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 LRRTM3Q86VH5 581 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 SLC26A11Q86WA9 606 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 ZNF567Q8N184 647 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 SGSM3Q96HU1 749 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 FICDQ9BVA6 458 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 VAPBO95292 243 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 PGFP49763 221 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 INCA1Q0VD86 236 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 PEX6Q13608 980 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 NAA25Q14CX7 972 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 SLC26A9Q7LBE3 791 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 RNF180Q86T96 592 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 UNC93AQ86WB7 457 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 PARP9Q8IXQ6 854 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 MAGEB18Q96M61 343 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 ZNF778Q96MU6 729 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 ACSS3Q9H6R3 686 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 RBM22Q9NW64 420 aaKnown RBP eCLIP14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 PPME1Q9Y570 386 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 DUSP11O75319 330 aaKnown RBP14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 SERPINB4P48594 390 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 SP3Q02447 781 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 PSMD5Q16401 504 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms