RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 EPAS1Q99814 870 aa15.7■□□□□ 0.1
NPHP4-205ENST00000466897 ECT2Q9H8V3 914 aa15.7■□□□□ 0.1
NPHP4-205ENST00000466897 TMPRSS4Q9NRS4 437 aa15.7■□□□□ 0.1
NPHP4-205ENST00000466897 DDX56Q9NY93 547 aaKnown RBP15.7■□□□□ 0.1
NPHP4-205ENST00000466897 RCOR3Q9P2K3 495 aaPredicted RBP15.7■□□□□ 0.1
NPHP4-205ENST00000466897 ZKSCAN5Q9Y2L8 839 aa15.7■□□□□ 0.1
NPHP4-205ENST00000466897 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.7■□□□□ 0.1
NPHP4-205ENST00000466897 CCDC66A2RUB6 948 aa15.69■□□□□ 0.1
NPHP4-205ENST00000466897 TYW5A2RUC4 315 aaKnown RBP15.69■□□□□ 0.1
NPHP4-205ENST00000466897 DRGXA6NNA5 263 aa15.69■□□□□ 0.1
NPHP4-205ENST00000466897 E9PAM4 449 aa15.69■□□□□ 0.1
NPHP4-205ENST00000466897 SCAMP3O14828 347 aaKnown RBP15.69■□□□□ 0.1
NPHP4-205ENST00000466897 CYBBP04839 570 aa15.69■□□□□ 0.1
NPHP4-205ENST00000466897 GLULP15104 373 aa15.69■□□□□ 0.1
NPHP4-205ENST00000466897 MSNP26038 577 aaKnown RBP15.69■□□□□ 0.1
NPHP4-205ENST00000466897 CTNNA2P26232 953 aa15.69■□□□□ 0.1
NPHP4-205ENST00000466897 HCAR3P49019 387 aa15.69■□□□□ 0.1
NPHP4-205ENST00000466897 NR1H3Q13133 447 aa15.69■□□□□ 0.1
NPHP4-205ENST00000466897 PDK2Q15119 407 aa15.69■□□□□ 0.1
NPHP4-205ENST00000466897 ITPRIPL2Q3MIP1 535 aa15.69■□□□□ 0.1
NPHP4-205ENST00000466897 RABGAP1LQ5R372 815 aa15.69■□□□□ 0.1
NPHP4-205ENST00000466897 FYB2Q5VWT5 728 aa15.69■□□□□ 0.1
NPHP4-205ENST00000466897 TRIM68Q6AZZ1 485 aa15.69■□□□□ 0.1
NPHP4-205ENST00000466897 TXNRD3NBQ6F5E7 133 aa15.69■□□□□ 0.1
NPHP4-205ENST00000466897 FBXL22Q6P050 247 aa15.69■□□□□ 0.1
NPHP4-205ENST00000466897 RHBDF2Q6PJF5 856 aa15.69■□□□□ 0.1
NPHP4-205ENST00000466897 LRRC31Q6UY01 552 aa15.69■□□□□ 0.1
NPHP4-205ENST00000466897 PEX26Q7Z412 305 aa15.69■□□□□ 0.1
NPHP4-205ENST00000466897 RNF135Q8IUD6 432 aa15.69■□□□□ 0.1
NPHP4-205ENST00000466897 GJD3Q8N144 294 aa15.69■□□□□ 0.1
NPHP4-205ENST00000466897 ZNF557Q8N988 423 aaPredicted RBP15.69■□□□□ 0.1
NPHP4-205ENST00000466897 ST13P5Q8NFI4 369 aaPredicted RBP15.69■□□□□ 0.1
NPHP4-205ENST00000466897 SIK2Q9H0K1 926 aa15.69■□□□□ 0.1
NPHP4-205ENST00000466897 GOLPH3Q9H4A6 298 aa15.69■□□□□ 0.1
NPHP4-205ENST00000466897 EBF3Q9H4W6 596 aa15.69■□□□□ 0.1
NPHP4-205ENST00000466897 ZWILCHQ9H900 591 aa15.69■□□□□ 0.1
NPHP4-205ENST00000466897 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.69■□□□□ 0.1
NPHP4-205ENST00000466897 TRMT1Q9NXH9 659 aaKnown RBP15.69■□□□□ 0.1
NPHP4-205ENST00000466897 AMFRQ9UKV5 643 aa15.69■□□□□ 0.1
NPHP4-205ENST00000466897 NEU3Q9UQ49 428 aa15.69■□□□□ 0.1
NPHP4-205ENST00000466897 GOLGA6L7A0A1B0GV03 622 aa15.68■□□□□ 0.1
NPHP4-205ENST00000466897 USP27XA6NNY8 438 aa15.68■□□□□ 0.1
NPHP4-205ENST00000466897 CACNG3O60359 315 aa15.68■□□□□ 0.1
NPHP4-205ENST00000466897 LRIG2O94898 1065 aa15.68■□□□□ 0.1
NPHP4-205ENST00000466897 ADH5P11766 374 aa15.68■□□□□ 0.1
NPHP4-205ENST00000466897 ARSAP15289 507 aa15.68■□□□□ 0.1
NPHP4-205ENST00000466897 EIF2DP41214 584 aaKnown RBP15.68■□□□□ 0.1
NPHP4-205ENST00000466897 SSR1P43307 286 aaKnown RBP15.68■□□□□ 0.1
NPHP4-205ENST00000466897 ARSEP51690 589 aa15.68■□□□□ 0.1
NPHP4-205ENST00000466897 GAD2Q05329 585 aa15.68■□□□□ 0.1
NPHP4-205ENST00000466897 SMTNL2Q2TAL5 461 aa15.68■□□□□ 0.1
NPHP4-205ENST00000466897 KCNT1Q5JUK3 1230 aa15.68■□□□□ 0.1
NPHP4-205ENST00000466897 LY6G5CQ5SRR4 150 aa15.68■□□□□ 0.1
NPHP4-205ENST00000466897 RFWD3Q6PCD5 774 aa15.68■□□□□ 0.1
NPHP4-205ENST00000466897 C1orf228Q6PIY5 440 aa15.68■□□□□ 0.1
NPHP4-205ENST00000466897 CHST9Q7L1S5 443 aa15.68■□□□□ 0.1
NPHP4-205ENST00000466897 TMEM25Q86YD3 366 aa15.68■□□□□ 0.1
NPHP4-205ENST00000466897 UBALD2Q8IYN6 164 aa15.68■□□□□ 0.1
NPHP4-205ENST00000466897 KATNAL2Q8IYT4 538 aa15.68■□□□□ 0.1
NPHP4-205ENST00000466897 LGI2Q8N0V4 545 aa15.68■□□□□ 0.1
NPHP4-205ENST00000466897 CSGALNACT1Q8TDX6 532 aa15.68■□□□□ 0.1
NPHP4-205ENST00000466897 TMA16Q96EY4 203 aaKnown RBP15.68■□□□□ 0.1
NPHP4-205ENST00000466897 HES6Q96HZ4 224 aa15.68■□□□□ 0.1
NPHP4-205ENST00000466897 DHX35Q9H5Z1 703 aaKnown RBP15.68■□□□□ 0.1
NPHP4-205ENST00000466897 VANGL2Q9ULK5 521 aa15.68■□□□□ 0.1
NPHP4-205ENST00000466897 HYOU1Q9Y4L1 999 aa15.68■□□□□ 0.1
NPHP4-205ENST00000466897 PCDHA3Q9Y5H8 950 aa15.68■□□□□ 0.1
NPHP4-205ENST00000466897 A0A1B0GVM2 712 aa15.67■□□□□ 0.1
NPHP4-205ENST00000466897 TCAF2A6NFQ2 919 aa15.67■□□□□ 0.1
NPHP4-205ENST00000466897 FGF10O15520 208 aaPredicted RBP15.67■□□□□ 0.1
NPHP4-205ENST00000466897 KIF5CO60282 957 aa15.67■□□□□ 0.1
NPHP4-205ENST00000466897 HOXD9P28356 352 aaPredicted RBP15.67■□□□□ 0.1
NPHP4-205ENST00000466897 VCPP55072 806 aaKnown RBP15.67■□□□□ 0.1
NPHP4-205ENST00000466897 AMPD2Q01433 879 aa15.67■□□□□ 0.1
NPHP4-205ENST00000466897 TNK2Q07912 1038 aa15.67■□□□□ 0.1
NPHP4-205ENST00000466897 CA9Q16790 459 aa15.67■□□□□ 0.1
NPHP4-205ENST00000466897 GAB4Q2WGN9 574 aa15.67■□□□□ 0.1
NPHP4-205ENST00000466897 MAP7D3Q8IWC1 876 aa15.67■□□□□ 0.1
NPHP4-205ENST00000466897 ETFBKMTQ8IXQ9 262 aa15.67■□□□□ 0.1
NPHP4-205ENST00000466897 PYROXD2Q8N2H3 581 aa15.67■□□□□ 0.1
NPHP4-205ENST00000466897 DDI1Q8WTU0 396 aa15.67■□□□□ 0.1
NPHP4-205ENST00000466897 TSC1Q92574 1164 aa15.67■□□□□ 0.1
NPHP4-205ENST00000466897 HSPH1Q92598 858 aa15.67■□□□□ 0.1
NPHP4-205ENST00000466897 TBC1D31Q96DN5 1066 aa15.67■□□□□ 0.1
NPHP4-205ENST00000466897 RPRD1AQ96P16 312 aaPredicted RBP15.67■□□□□ 0.1
NPHP4-205ENST00000466897 KCTD15Q96SI1 283 aaPredicted RBP15.67■□□□□ 0.1
NPHP4-205ENST00000466897 ZNF670Q9BS34 389 aa15.67■□□□□ 0.1
NPHP4-205ENST00000466897 BBS2Q9BXC9 721 aa15.67■□□□□ 0.1
NPHP4-205ENST00000466897 SLC2A11Q9BYW1 496 aa15.67■□□□□ 0.1
NPHP4-205ENST00000466897 ZYG11BQ9C0D3 744 aa15.67■□□□□ 0.1
NPHP4-205ENST00000466897 C8orf33Q9H7E9 229 aaPredicted RBP15.67■□□□□ 0.1
NPHP4-205ENST00000466897 PCDH18Q9HCL0 1135 aa15.67■□□□□ 0.1
NPHP4-205ENST00000466897 DONSONQ9NYP3 566 aa15.67■□□□□ 0.1
NPHP4-205ENST00000466897 GTSE1Q9NYZ3 720 aa15.67■□□□□ 0.1
NPHP4-205ENST00000466897 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.67■□□□□ 0.1
NPHP4-205ENST00000466897 OTOL1A6NHN0 477 aaPredicted RBP15.66■□□□□ 0.1
NPHP4-205ENST00000466897 WASH4PA8MWX3 477 aa15.66■□□□□ 0.1
NPHP4-205ENST00000466897 FAM72CH0Y354 149 aa15.66■□□□□ 0.1
NPHP4-205ENST00000466897 H3BRJ5 948 aa15.66■□□□□ 0.1
NPHP4-205ENST00000466897 CLDN11O75508 207 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms