RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 OCM2P0CE71 109 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 OCMP0CE72 109 aaPredicted RBP19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 NCF1P14598 390 aaPredicted RBP19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 QPCTQ16769 361 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 KCTD21Q4G0X4 260 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 ZNF512Q96ME7 567 aaPredicted RBP19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 C1orf50Q9BV19 199 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 UGT2B28Q9BY64 529 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 TSPAN16Q9UKR8 245 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 ALOX15BO15296 676 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 HARS2P49590 506 aaKnown RBP19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 CASP5P51878 434 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 GTF2BQ00403 316 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 PPATQ06203 517 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 FRG1Q14331 258 aaKnown RBP19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 TSHZ1Q6ZSZ6 1077 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 OTOAQ7RTW8 1153 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 PHF13Q86YI8 300 aaPredicted RBP19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 CAMK1DQ8IU85 385 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 GLIS3Q8NEA6 775 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 COPS7BQ9H9Q2 264 aaPredicted RBP19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 PCDHA11Q9Y5I1 949 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 ARHGAP23Q9P227 1491 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 FAM237BA0A1B0GVD1 139 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 CHKAP35790 457 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 CEP78Q5JTW2 689 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 POLNQ7Z5Q5 900 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 MIER2Q8N344 545 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 DNERQ8NFT8 737 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 WDR41Q9HAD4 459 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 CYLDQ9NQC7 956 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 XPNPEP3Q9NQH7 507 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 PDGFCQ9NRA1 345 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 CRLS1Q9UJA2 301 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 ZMYND8Q9ULU4 1186 aaPredicted RBP19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 TNS2Q63HR2 1409 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 SAMD7Q7Z3H4 446 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 PIF1Q9H611 641 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 AAASQ9NRG9 546 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 WBP4O75554 376 aaKnown RBP19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 ARIH2O95376 493 aa19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 IFNA14P01570 189 aa19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 CCT8P50990 548 aa19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 LAMTOR4Q0VGL1 99 aa19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 ACVR2BQ13705 512 aa19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 ARHGEF7Q14155 803 aa19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 DGUOKQ16854 277 aa19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 CYP2W1Q8TAV3 490 aa19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 FAM136AQ96C01 138 aa19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 USE1Q9NZ43 259 aa19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 TPRKBQ9Y3C4 175 aa19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 FAM95CA0A1B0GW59 222 aa19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 RNF225M0QZC1 329 aaPredicted RBP19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 ACO1P21399 889 aaKnown RBP19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 FECHP22830 423 aa19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 HIST2H2ACQ16777 129 aaPredicted RBP19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 HIST2H2AA3Q6FI13 130 aa19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 TMC7Q7Z402 723 aa19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 EID3Q8N140 333 aa19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 MYO1HQ8N1T3 1032 aa19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 TADA1Q96BN2 335 aa19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 RIC1Q4ADV7 1423 aa19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 UPP2O95045 317 aa19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 FMO1Q01740 532 aa19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 BNIPLQ7Z465 357 aa19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 SREK1IP1Q8N9Q2 155 aaPredicted RBP19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 RRM2P31350 389 aa19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 RXRGP48443 463 aa19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 LHX1P48742 406 aa19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 PRIM2P49643 509 aa19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 MAP3K7CLP57077 242 aa19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 PPP4R4Q6NUP7 873 aa19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 C4orf32Q8N8J7 132 aa19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 GRIP2Q9C0E4 1043 aa19.41■□□□□ 0.7
CCDC88B-204ENST00000463837 RPLP2P05387 115 aaKnown RBP19.4■□□□□ 0.7
CCDC88B-204ENST00000463837 SERPIND1P05546 499 aa19.4■□□□□ 0.7
CCDC88B-204ENST00000463837 SLC6A3Q01959 620 aa19.4■□□□□ 0.7
CCDC88B-204ENST00000463837 SLC30A10Q6XR72 485 aa19.4■□□□□ 0.7
CCDC88B-204ENST00000463837 BHLHE22Q8NFJ8 381 aaPredicted RBP19.4■□□□□ 0.7
CCDC88B-204ENST00000463837 PHF21AQ96BD5 680 aa19.4■□□□□ 0.7
CCDC88B-204ENST00000463837 HMG20AQ9NP66 347 aa19.4■□□□□ 0.7
CCDC88B-204ENST00000463837 DCCP43146 1447 aa19.4■□□□□ 0.7
CCDC88B-204ENST00000463837 F8VP50 259 aa19.4■□□□□ 0.7
CCDC88B-204ENST00000463837 BAIAP3O94812 1187 aa19.4■□□□□ 0.7
CCDC88B-204ENST00000463837 ZSCAN5DPP0CG00 497 aa19.4■□□□□ 0.7
CCDC88B-204ENST00000463837 BNIP1Q12981 228 aa19.4■□□□□ 0.7
CCDC88B-204ENST00000463837 RINLQ6ZS11 566 aa19.4■□□□□ 0.7
CCDC88B-204ENST00000463837 DDX53Q86TM3 631 aaKnown RBP19.4■□□□□ 0.7
CCDC88B-204ENST00000463837 MTERF3Q96E29 417 aa19.4■□□□□ 0.7
CCDC88B-204ENST00000463837 FAM120BQ96EK7 910 aaKnown RBP19.4■□□□□ 0.7
CCDC88B-204ENST00000463837 DDTLA6NHG4 134 aaPredicted RBP19.4■□□□□ 0.7
CCDC88B-204ENST00000463837 KATNA1O75449 491 aa19.4■□□□□ 0.7
CCDC88B-204ENST00000463837 FGRP09769 529 aa19.4■□□□□ 0.7
CCDC88B-204ENST00000463837 COX4I1P13073 169 aa19.4■□□□□ 0.7
CCDC88B-204ENST00000463837 TRAF2Q12933 501 aa19.4■□□□□ 0.7
CCDC88B-204ENST00000463837 PRAMEF18Q5VWM3 479 aa19.4■□□□□ 0.7
CCDC88B-204ENST00000463837 SEPHS2Q99611 448 aa19.4■□□□□ 0.7
CCDC88B-204ENST00000463837 A0A0B4J269 797 aa19.4■□□□□ 0.7
CCDC88B-204ENST00000463837 ACAT1P24752 427 aaKnown RBP19.4■□□□□ 0.7
CCDC88B-204ENST00000463837 TOP3AQ13472 1001 aaPredicted RBP19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms