RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 NUBP1P53384 320 aa20.47■□□□□ 0.87
COL9A3-204ENST00000463487 KDSRQ06136 332 aa20.47■□□□□ 0.87
COL9A3-204ENST00000463487 CDH18Q13634 790 aa20.47■□□□□ 0.87
COL9A3-204ENST00000463487 CCINQ13939 588 aa20.47■□□□□ 0.87
COL9A3-204ENST00000463487 EFHC2Q5JST6 749 aa20.47■□□□□ 0.87
COL9A3-204ENST00000463487 FSTL4Q6MZW2 842 aa20.47■□□□□ 0.87
COL9A3-204ENST00000463487 C12orf40Q86WS4 652 aa20.47■□□□□ 0.87
COL9A3-204ENST00000463487 TXLNBQ8N3L3 684 aa20.47■□□□□ 0.87
COL9A3-204ENST00000463487 ZNF564Q8TBZ8 553 aaPredicted RBP20.47■□□□□ 0.87
COL9A3-204ENST00000463487 NTAN1Q96AB6 310 aa20.47■□□□□ 0.87
COL9A3-204ENST00000463487 CLDN23Q96B33 292 aa20.47■□□□□ 0.87
COL9A3-204ENST00000463487 LRFN3Q9BTN0 628 aa20.47■□□□□ 0.87
COL9A3-204ENST00000463487 MTF2Q9Y483 593 aaPredicted RBP20.47■□□□□ 0.87
COL9A3-204ENST00000463487 HS3ST4Q9Y661 456 aa20.47■□□□□ 0.87
COL9A3-204ENST00000463487 MYOFQ9NZM1 2061 aa20.46■□□□□ 0.87
COL9A3-204ENST00000463487 A0A1B0GVM2 712 aa20.46■□□□□ 0.87
COL9A3-204ENST00000463487 TCAF2A6NFQ2 919 aa20.46■□□□□ 0.87
COL9A3-204ENST00000463487 EIF3CLB5ME19 914 aaKnown RBP20.46■□□□□ 0.87
COL9A3-204ENST00000463487 GFRA2O00451 464 aa20.46■□□□□ 0.87
COL9A3-204ENST00000463487 DCNP07585 359 aaKnown RBP20.46■□□□□ 0.87
COL9A3-204ENST00000463487 CHRNB1P11230 501 aa20.46■□□□□ 0.87
COL9A3-204ENST00000463487 AVPR2P30518 371 aa20.46■□□□□ 0.87
COL9A3-204ENST00000463487 ADRA1BP35368 520 aa20.46■□□□□ 0.87
COL9A3-204ENST00000463487 TNFRSF4P43489 277 aa20.46■□□□□ 0.87
COL9A3-204ENST00000463487 ATXN1P54253 815 aaKnown RBP20.46■□□□□ 0.87
COL9A3-204ENST00000463487 OXCT1P55809 520 aa20.46■□□□□ 0.87
COL9A3-204ENST00000463487 AUHQ13825 339 aaKnown RBP20.46■□□□□ 0.87
COL9A3-204ENST00000463487 ANKS1BQ7Z6G8 1248 aa20.46■□□□□ 0.87
COL9A3-204ENST00000463487 SLFN11Q7Z7L1 901 aa20.46■□□□□ 0.87
COL9A3-204ENST00000463487 MFN1Q8IWA4 741 aa20.46■□□□□ 0.87
COL9A3-204ENST00000463487 TERB1Q8NA31 727 aa20.46■□□□□ 0.87
COL9A3-204ENST00000463487 PRICKLE1Q96MT3 831 aaPredicted RBP20.46■□□□□ 0.87
COL9A3-204ENST00000463487 EIF3CQ99613 913 aaKnown RBP20.46■□□□□ 0.87
COL9A3-204ENST00000463487 STIM2Q9P246 746 aa20.46■□□□□ 0.87
COL9A3-204ENST00000463487 SLC27A6Q9Y2P4 619 aa20.46■□□□□ 0.87
COL9A3-204ENST00000463487 EPN1Q9Y6I3 576 aaPredicted RBP20.46■□□□□ 0.87
COL9A3-204ENST00000463487 H0Y626 953 aa20.45■□□□□ 0.86
COL9A3-204ENST00000463487 PRPSAP2O60256 369 aa20.45■□□□□ 0.86
COL9A3-204ENST00000463487 ATG13O75143 517 aa20.45■□□□□ 0.86
COL9A3-204ENST00000463487 NDUFA10O95299 355 aa20.45■□□□□ 0.86
COL9A3-204ENST00000463487 LCA5LO95447 670 aa20.45■□□□□ 0.86
COL9A3-204ENST00000463487 EGFP01133 1207 aa20.45■□□□□ 0.86
COL9A3-204ENST00000463487 MAGEA1P43355 309 aa20.45■□□□□ 0.86
COL9A3-204ENST00000463487 SLC6A11P48066 632 aa20.45■□□□□ 0.86
COL9A3-204ENST00000463487 OGDHQ02218 1023 aa20.45■□□□□ 0.86
COL9A3-204ENST00000463487 SH3PXD2AQ5TCZ1 1133 aa20.45■□□□□ 0.86
COL9A3-204ENST00000463487 ZNF687Q8N1G0 1237 aa20.45■□□□□ 0.86
COL9A3-204ENST00000463487 CCDC112Q8NEF3 446 aa20.45■□□□□ 0.86
COL9A3-204ENST00000463487 WFIKKN2Q8TEU8 576 aa20.45■□□□□ 0.86
COL9A3-204ENST00000463487 RFFLQ8WZ73 363 aa20.45■□□□□ 0.86
COL9A3-204ENST00000463487 ARHGEF26Q96DR7 871 aa20.45■□□□□ 0.86
COL9A3-204ENST00000463487 PPP1R9BQ96SB3 815 aa20.45■□□□□ 0.86
COL9A3-204ENST00000463487 PRMT1Q99873 361 aaKnown RBP20.45■□□□□ 0.86
COL9A3-204ENST00000463487 PACSIN1Q9BY11 444 aa20.45■□□□□ 0.86
COL9A3-204ENST00000463487 FBXO10Q9UK96 956 aa20.45■□□□□ 0.86
COL9A3-204ENST00000463487 VANGL2Q9ULK5 521 aa20.45■□□□□ 0.86
COL9A3-204ENST00000463487 KIAA1549LQ6ZVL6 1849 aa20.44■□□□□ 0.86
COL9A3-204ENST00000463487 SOWAHDA6NJG2 315 aa20.44■□□□□ 0.86
COL9A3-204ENST00000463487 PCK1P35558 622 aa20.44■□□□□ 0.86
COL9A3-204ENST00000463487 RPS24P62847 133 aaKnown RBP20.44■□□□□ 0.86
COL9A3-204ENST00000463487 KRT83P78385 493 aa20.44■□□□□ 0.86
COL9A3-204ENST00000463487 SCAPQ12770 1279 aa20.44■□□□□ 0.86
COL9A3-204ENST00000463487 NAIF1Q69YI7 327 aaPredicted RBP20.44■□□□□ 0.86
COL9A3-204ENST00000463487 FBXL22Q6P050 247 aa20.44■□□□□ 0.86
COL9A3-204ENST00000463487 TRMT11Q7Z4G4 463 aaKnown RBP20.44■□□□□ 0.86
COL9A3-204ENST00000463487 CFAP52Q8N1V2 620 aa20.44■□□□□ 0.86
COL9A3-204ENST00000463487 CARNMT1Q8N4J0 409 aa20.44■□□□□ 0.86
COL9A3-204ENST00000463487 NIPA2Q8N8Q9 360 aa20.44■□□□□ 0.86
COL9A3-204ENST00000463487 TMEM105Q8N8V8 129 aa20.44■□□□□ 0.86
COL9A3-204ENST00000463487 KCNV2Q8TDN2 545 aa20.44■□□□□ 0.86
COL9A3-204ENST00000463487 UCMAQ8WVF2 138 aa20.44■□□□□ 0.86
COL9A3-204ENST00000463487 ACDQ96AP0 544 aa20.44■□□□□ 0.86
COL9A3-204ENST00000463487 PRRX2Q99811 253 aa20.44■□□□□ 0.86
COL9A3-204ENST00000463487 OSBPL2Q9H1P3 480 aa20.44■□□□□ 0.86
COL9A3-204ENST00000463487 CHRDQ9H2X0 955 aa20.44■□□□□ 0.86
COL9A3-204ENST00000463487 FBRSL1Q9HCM7 1045 aaKnown RBP20.44■□□□□ 0.86
COL9A3-204ENST00000463487 OR12D3Q9UGF7 316 aa20.44■□□□□ 0.86
COL9A3-204ENST00000463487 A0A0A0MRY4 1105 aa20.43■□□□□ 0.86
COL9A3-204ENST00000463487 TIMM44O43615 452 aa20.43■□□□□ 0.86
COL9A3-204ENST00000463487 CLDN11O75508 207 aa20.43■□□□□ 0.86
COL9A3-204ENST00000463487 LUC7L3O95232 432 aaKnown RBP20.43■□□□□ 0.86
COL9A3-204ENST00000463487 MOCS3O95396 460 aa20.43■□□□□ 0.86
COL9A3-204ENST00000463487 SGSHP51688 502 aa20.43■□□□□ 0.86
COL9A3-204ENST00000463487 NRG1Q02297 640 aaPredicted RBP20.43■□□□□ 0.86
COL9A3-204ENST00000463487 EIF4HQ15056 248 aaKnown RBP20.43■□□□□ 0.86
COL9A3-204ENST00000463487 HSF5Q4G112 596 aaPredicted RBP20.43■□□□□ 0.86
COL9A3-204ENST00000463487 PSTKQ8IV42 348 aaKnown RBP20.43■□□□□ 0.86
COL9A3-204ENST00000463487 PHTF2Q8N3S3 785 aa20.43■□□□□ 0.86
COL9A3-204ENST00000463487 FIBINQ8TAL6 211 aa20.43■□□□□ 0.86
COL9A3-204ENST00000463487 TRIM7Q9C029 511 aa20.43■□□□□ 0.86
COL9A3-204ENST00000463487 RETREG1Q9H6L5 497 aa20.43■□□□□ 0.86
COL9A3-204ENST00000463487 RBM12Q9NTZ6 932 aaKnown RBP20.43■□□□□ 0.86
COL9A3-204ENST00000463487 PCDHA13Q9Y5I0 950 aa20.43■□□□□ 0.86
COL9A3-204ENST00000463487 TRIOO75962 3097 aa20.42■□□□□ 0.86
COL9A3-204ENST00000463487 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP20.42■□□□□ 0.86
COL9A3-204ENST00000463487 E9PAM4 449 aa20.42■□□□□ 0.86
COL9A3-204ENST00000463487 PI15O43692 258 aa20.42■□□□□ 0.86
COL9A3-204ENST00000463487 RNF40O75150 1001 aa20.42■□□□□ 0.86
COL9A3-204ENST00000463487 CISD3P0C7P0 127 aa20.42■□□□□ 0.86
COL9A3-204ENST00000463487 CDH4P55283 916 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms