RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 TRDMT1O14717 391 aaKnown RBP11.94□□□□□ -0.5
NPHP4-204ENST00000460696 PAPSS1O43252 624 aaPredicted RBP11.94□□□□□ -0.5
NPHP4-204ENST00000460696 TADA2AO75478 443 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 ATG7O95352 703 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 F9P00740 461 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 NOS2P35228 1153 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 GP5P40197 560 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 COPAP53621 1224 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 NSUN2Q08J23 767 aaKnown RBP eCLIP11.94□□□□□ -0.5
NPHP4-204ENST00000460696 KLF1Q13351 362 aaPredicted RBP11.94□□□□□ -0.5
NPHP4-204ENST00000460696 TARBP2Q15633 366 aaKnown RBP11.94□□□□□ -0.5
NPHP4-204ENST00000460696 DRICH1Q6PGQ1 229 aaPredicted RBP11.94□□□□□ -0.5
NPHP4-204ENST00000460696 LPPQ93052 612 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 WNT8BQ93098 351 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 RMDN1Q96DB5 314 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 CMTM5Q96DZ9 223 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 HSFY1Q96LI6 401 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 BTBD10Q9BSF8 475 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 A0A0G2JLL6 359 aaPredicted RBP11.94□□□□□ -0.5
NPHP4-204ENST00000460696 SMIM28A0A1B0GU29 152 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.94□□□□□ -0.5
NPHP4-204ENST00000460696 MEI4A8MW99 385 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 SKAP2O75563 359 aaPredicted RBP11.94□□□□□ -0.5
NPHP4-204ENST00000460696 ASMTLO95671 621 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 NPR3P17342 541 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 GJA5P36382 358 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 SERPINB5P36952 375 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 RABGGTBP53611 331 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 BNIP1Q12981 228 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 ZNF235Q14590 738 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 TRIP10Q15642 601 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 MSS51Q4VC12 460 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 SH3D19Q5HYK7 790 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 PRRT2Q7Z6L0 340 aaPredicted RBP11.94□□□□□ -0.5
NPHP4-204ENST00000460696 SCUBE1Q8IWY4 988 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 PCDH19Q8TAB3 1148 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 LRRC39Q96DD0 335 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 POPDC2Q9HBU9 364 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 DONSONQ9NYP3 566 aa11.94□□□□□ -0.5
NPHP4-204ENST00000460696 STK25O00506 426 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 PPEF2O14830 753 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 ODC1P11926 461 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 LMO2P25791 158 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 SLC1A6P48664 564 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 MAP3K10Q02779 954 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 OASLQ15646 514 aaKnown RBP11.93□□□□□ -0.5
NPHP4-204ENST00000460696 NOL9Q5SY16 702 aaKnown RBP11.93□□□□□ -0.5
NPHP4-204ENST00000460696 C9orf57Q5W0N0 161 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 GLB1LQ6UWU2 654 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 C6orf89Q6UWU4 347 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 NAF1Q96HR8 494 aaKnown RBP11.93□□□□□ -0.5
NPHP4-204ENST00000460696 CSPG4P5Q96PW8 444 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 APBA2Q99767 749 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 TKTL2Q9H0I9 626 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 R3HDMLQ9H3Y0 253 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 CYP4F12Q9HCS2 524 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 PDLIM7Q9NR12 457 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 DLGAP2Q9P1A6 1054 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 A0A096LPK6 155 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 TPP1O14773 563 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 PFDN6O15212 129 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 PRPF4O43172 522 aaKnown RBP eCLIP11.93□□□□□ -0.5
NPHP4-204ENST00000460696 HCRTO43612 131 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 LTFP02788 710 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 ERCC2P18074 760 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 LHX1P48742 406 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 SCNN1GP51170 649 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 DUSP28Q4G0W2 176 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 TMEM154Q6P9G4 183 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 UNC5AQ6ZN44 842 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 SHCBP1Q8NEM2 672 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 SLC44A1Q8WWI5 657 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 PAWRQ96IZ0 340 aaKnown RBP11.93□□□□□ -0.5
NPHP4-204ENST00000460696 ILKAPQ9H0C8 392 aaPredicted RBP11.93□□□□□ -0.5
NPHP4-204ENST00000460696 CATSPERBQ9H7T0 1116 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 SRRDQ9UH36 339 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 RUVBL2Q9Y230 463 aaKnown RBP11.93□□□□□ -0.5
NPHP4-204ENST00000460696 UBTFL6P0CB48 400 aaPredicted RBP11.93□□□□□ -0.5
NPHP4-204ENST00000460696 VHLP40337 213 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 ACCSLQ4AC99 568 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 ADGRD1Q6QNK2 874 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 WDTC1Q8N5D0 677 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 PCSK9Q8NBP7 692 aaKnown RBP11.93□□□□□ -0.5
NPHP4-204ENST00000460696 CMASQ8NFW8 434 aaPredicted RBP11.93□□□□□ -0.5
NPHP4-204ENST00000460696 P2RY11Q96G91 374 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 TSC22D3Q99576 134 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 XYLT2Q9H1B5 865 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 THAP1Q9NVV9 213 aa11.93□□□□□ -0.5
NPHP4-204ENST00000460696 EDN1P05305 212 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 IVDP26440 423 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 MATKP42679 507 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 TRIM32Q13049 653 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 KPNB1Q14974 876 aaKnown RBP11.92□□□□□ -0.5
NPHP4-204ENST00000460696 MGAT5BQ3V5L5 792 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 TFAP2DQ7Z6R9 452 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 ALYREFQ86V81 257 aaKnown RBP11.92□□□□□ -0.5
NPHP4-204ENST00000460696 LRRC52Q8N7C0 313 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 URGCPQ8TCY9 931 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 MCRS1Q96EZ8 462 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 SEPT5Q99719 369 aaPredicted RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms