RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 FAM221BA6H8Z2 402 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 TRIM49BA6NDI0 452 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 TULP2O00295 520 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 GIPC1O14908 333 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 ACSL4O60488 711 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 TSPAN3O60637 253 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 IGLV3-27P01718 113 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 APOEP02649 317 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 SRPRAP08240 638 aaKnown RBP7.35□□□□□ -1.23
VPS41-208ENST00000448833 PABPC1P11940 636 aaKnown RBP7.35□□□□□ -1.23
VPS41-208ENST00000448833 HLA-FP30511 346 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 MATKP42679 507 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 PMS1P54277 932 aaKnown RBP7.35□□□□□ -1.23
VPS41-208ENST00000448833 SIM1P81133 766 aaPredicted RBP7.35□□□□□ -1.23
VPS41-208ENST00000448833 FOXK1P85037 733 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 PAK1Q13153 545 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 ARID5BQ14865 1188 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 TRIP6Q15654 476 aaKnown RBP7.35□□□□□ -1.23
VPS41-208ENST00000448833 PIK3R6Q5UE93 754 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 DCAF12L1Q5VU92 463 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 KLHL10Q6JEL2 608 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 TTI2Q6NXR4 508 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 PMF1Q6P1K2 205 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 USP30Q70CQ3 517 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 CHST9Q7L1S5 443 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 BHLHA9Q7RTU4 235 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 TRIM59Q8IWR1 403 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 UBR7Q8N806 425 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 KDF1Q8NAX2 398 aaPredicted RBP7.35□□□□□ -1.23
VPS41-208ENST00000448833 RBBP8NLQ8NC74 664 aaPredicted RBP7.35□□□□□ -1.23
VPS41-208ENST00000448833 NELFBQ8WX92 580 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 TTC17Q96AE7 1141 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 NOX5Q96PH1 765 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 CDC6Q99741 560 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 SCNM1Q9BWG6 230 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 BTBD1Q9H0C5 482 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 MIR1-1HGQ9H1L0 117 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 LHX5Q9H2C1 402 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 THAP9Q9H5L6 903 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 POPDC2Q9HBU9 364 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 SGK2Q9HBY8 427 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 ST7Q9NRC1 585 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 ABCB8Q9NUT2 735 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.35□□□□□ -1.23
VPS41-208ENST00000448833 KIAA1522Q9P206 1035 aaPredicted RBP7.35□□□□□ -1.23
VPS41-208ENST00000448833 MAN1B1Q9UKM7 699 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 CNTN6Q9UQ52 1028 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 MSRB2Q9Y3D2 182 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 PCDHGB2Q9Y5G2 931 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 GTF3C3Q9Y5Q9 886 aa7.35□□□□□ -1.23
VPS41-208ENST00000448833 FRYQ5TBA9 3013 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 ATXN2Q99700 1313 aaKnown RBP7.34□□□□□ -1.23
VPS41-208ENST00000448833 TP53BP1Q12888 1972 aaPredicted RBP7.34□□□□□ -1.23
VPS41-208ENST00000448833 TARSL2A2RTX5 802 aaKnown RBP7.34□□□□□ -1.23
VPS41-208ENST00000448833 GTPBP10A4D1E9 387 aaKnown RBP7.34□□□□□ -1.23
VPS41-208ENST00000448833 KCNJ18B7U540 433 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 PPP1R3GB7ZBB8 358 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 RNF225M0QZC1 329 aaPredicted RBP7.34□□□□□ -1.23
VPS41-208ENST00000448833 TBL1XO60907 577 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 GLI1P08151 1106 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 KRT5P13647 590 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 CD59P13987 128 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 PRKCHP24723 683 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 GPD2P43304 727 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 RPL34P49207 117 aaKnown RBP7.34□□□□□ -1.23
VPS41-208ENST00000448833 RGS7P49802 495 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 COPAP53621 1224 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 YWHAZP63104 245 aaKnown RBP7.34□□□□□ -1.23
VPS41-208ENST00000448833 SULT2A1Q06520 285 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 CDH18Q13634 790 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 MORC3Q14149 939 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 INAVAQ3KP66 663 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 EFHC1Q5JVL4 640 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 ACBD5Q5T8D3 534 aaPredicted RBP7.34□□□□□ -1.23
VPS41-208ENST00000448833 TTC39BQ5VTQ0 682 aaPredicted RBP7.34□□□□□ -1.23
VPS41-208ENST00000448833 RNF219Q5W0B1 726 aaPredicted RBP7.34□□□□□ -1.23
VPS41-208ENST00000448833 TMEM215Q68D42 235 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 MBLAC2Q68D91 279 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 ZNF776Q68DI1 518 aaPredicted RBP7.34□□□□□ -1.23
VPS41-208ENST00000448833 ISM2Q6H9L7 571 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 RRAGAQ7L523 313 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 GLRX5Q86SX6 157 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 TMEM110Q86TL2 294 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 ADIPOR2Q86V24 386 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 NAXDQ8IW45 347 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 MFN1Q8IWA4 741 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 SCUBE3Q8IX30 993 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 ATP6V0D2Q8N8Y2 350 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 LMO3Q8TAP4 145 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 TFAP2BQ92481 460 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 NDRG1Q92597 394 aaKnown RBP7.34□□□□□ -1.23
VPS41-208ENST00000448833 FAM149B1Q96BN6 582 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 BTN2A3PQ96KV6 586 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 SRRTQ9BXP5 876 aaKnown RBP7.34□□□□□ -1.23
VPS41-208ENST00000448833 MIS12Q9H081 205 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 SLC6A17Q9H1V8 727 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 GAREM1Q9H706 876 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 UBE2TQ9NPD8 197 aaPredicted RBP7.34□□□□□ -1.23
VPS41-208ENST00000448833 TJP2Q9UDY2 1190 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 WASF3Q9UPY6 502 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms