RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 DRC7Q8IY82 874 aa16.95■□□□□ 0.3
SF3A1-204ENST00000447376 AHI1Q8N157 1196 aa16.95■□□□□ 0.3
SF3A1-204ENST00000447376 PGBD3Q8N328 593 aa16.95■□□□□ 0.3
SF3A1-204ENST00000447376 CARNMT1Q8N4J0 409 aa16.95■□□□□ 0.3
SF3A1-204ENST00000447376 PGAP3Q96FM1 320 aaPredicted RBP16.95■□□□□ 0.3
SF3A1-204ENST00000447376 PCDHB18PQ96TA0 734 aa16.95■□□□□ 0.3
SF3A1-204ENST00000447376 NPY6RQ99463 290 aa16.95■□□□□ 0.3
SF3A1-204ENST00000447376 C2orf42Q9NWW7 574 aa16.95■□□□□ 0.3
SF3A1-204ENST00000447376 EBF1Q9UH73 591 aa16.95■□□□□ 0.3
SF3A1-204ENST00000447376 GGA2Q9UJY4 613 aa16.95■□□□□ 0.3
SF3A1-204ENST00000447376 PLA2G4CQ9UP65 541 aa16.95■□□□□ 0.3
SF3A1-204ENST00000447376 PRR23AA6NEV1 266 aa16.94■□□□□ 0.3
SF3A1-204ENST00000447376 PRRT4C9JH25 899 aa16.94■□□□□ 0.3
SF3A1-204ENST00000447376 SGK1O00141 431 aa16.94■□□□□ 0.3
SF3A1-204ENST00000447376 AP5Z1O43299 807 aa16.94■□□□□ 0.3
SF3A1-204ENST00000447376 RPP40O75818 363 aaKnown RBP16.94■□□□□ 0.3
SF3A1-204ENST00000447376 SKILP12757 684 aa16.94■□□□□ 0.3
SF3A1-204ENST00000447376 HNRNPLP14866 589 aaKnown RBP eCLIP16.94■□□□□ 0.3
SF3A1-204ENST00000447376 PDGFRAP16234 1089 aa16.94■□□□□ 0.3
SF3A1-204ENST00000447376 RDXP35241 583 aaKnown RBP16.94■□□□□ 0.3
SF3A1-204ENST00000447376 PXNP49023 591 aaPredicted RBP16.94■□□□□ 0.3
SF3A1-204ENST00000447376 OXCT1P55809 520 aa16.94■□□□□ 0.3
SF3A1-204ENST00000447376 PITX1P78337 314 aaPredicted RBP16.94■□□□□ 0.3
SF3A1-204ENST00000447376 BYSLQ13895 437 aaKnown RBP16.94■□□□□ 0.3
SF3A1-204ENST00000447376 ARL13BQ3SXY8 428 aa16.94■□□□□ 0.3
SF3A1-204ENST00000447376 USP39Q53GS9 565 aaKnown RBP16.94■□□□□ 0.3
SF3A1-204ENST00000447376 EGFLAMQ63HQ2 1017 aa16.94■□□□□ 0.3
SF3A1-204ENST00000447376 NADSYN1Q6IA69 706 aa16.94■□□□□ 0.3
SF3A1-204ENST00000447376 ANO7Q6IWH7 933 aa16.94■□□□□ 0.3
SF3A1-204ENST00000447376 DNAJC24Q6P3W2 148 aa16.94■□□□□ 0.3
SF3A1-204ENST00000447376 LRRC31Q6UY01 552 aa16.94■□□□□ 0.3
SF3A1-204ENST00000447376 SFTPA1Q8IWL2 248 aa16.94■□□□□ 0.3
SF3A1-204ENST00000447376 RPRD1AQ96P16 312 aaPredicted RBP16.94■□□□□ 0.3
SF3A1-204ENST00000447376 PPP1R9BQ96SB3 815 aa16.94■□□□□ 0.3
SF3A1-204ENST00000447376 TBCBQ99426 244 aa16.94■□□□□ 0.3
SF3A1-204ENST00000447376 TKTL2Q9H0I9 626 aa16.94■□□□□ 0.3
SF3A1-204ENST00000447376 EPC1Q9H2F5 836 aa16.94■□□□□ 0.3
SF3A1-204ENST00000447376 ABCB8Q9NUT2 735 aa16.94■□□□□ 0.3
SF3A1-204ENST00000447376 ELOVL2Q9NXB9 296 aa16.94■□□□□ 0.3
SF3A1-204ENST00000447376 NCDNQ9UBB6 729 aa16.94■□□□□ 0.3
SF3A1-204ENST00000447376 GMEB2Q9UKD1 530 aa16.94■□□□□ 0.3
SF3A1-204ENST00000447376 ATG2BQ96BY7 2078 aa16.93■□□□□ 0.3
SF3A1-204ENST00000447376 TCRBV21S2A2A0A5A6 115 aa16.93■□□□□ 0.3
SF3A1-204ENST00000447376 AKR1B15C9JRZ8 316 aaPredicted RBP16.93■□□□□ 0.3
SF3A1-204ENST00000447376 SYNCRIPO60506 623 aaKnown RBP16.93■□□□□ 0.3
SF3A1-204ENST00000447376 PABPC1P11940 636 aaKnown RBP16.93■□□□□ 0.3
SF3A1-204ENST00000447376 GZMAP12544 262 aa16.93■□□□□ 0.3
SF3A1-204ENST00000447376 POLR2EP19388 210 aaKnown RBP16.93■□□□□ 0.3
SF3A1-204ENST00000447376 HNRNPH3P31942 346 aaKnown RBP16.93■□□□□ 0.3
SF3A1-204ENST00000447376 FLT3P36888 993 aa16.93■□□□□ 0.3
SF3A1-204ENST00000447376 GSCP56915 257 aaPredicted RBP16.93■□□□□ 0.3
SF3A1-204ENST00000447376 GEN1Q17RS7 908 aa16.93■□□□□ 0.3
SF3A1-204ENST00000447376 E4F1Q66K89 784 aaPredicted RBP16.93■□□□□ 0.3
SF3A1-204ENST00000447376 ACAD10Q6JQN1 1059 aa16.93■□□□□ 0.3
SF3A1-204ENST00000447376 DCUN1D2Q6PH85 259 aa16.93■□□□□ 0.3
SF3A1-204ENST00000447376 CHST9Q7L1S5 443 aa16.93■□□□□ 0.3
SF3A1-204ENST00000447376 ZNF571Q7Z3V5 609 aaPredicted RBP16.93■□□□□ 0.3
SF3A1-204ENST00000447376 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.93■□□□□ 0.3
SF3A1-204ENST00000447376 C11orf74Q86VG3 221 aa16.93■□□□□ 0.3
SF3A1-204ENST00000447376 C3orf20Q8ND61 904 aa16.93■□□□□ 0.3
SF3A1-204ENST00000447376 FIBINQ8TAL6 211 aa16.93■□□□□ 0.3
SF3A1-204ENST00000447376 HMGB4Q8WW32 186 aa16.93■□□□□ 0.3
SF3A1-204ENST00000447376 GAB3Q8WWW8 586 aa16.93■□□□□ 0.3
SF3A1-204ENST00000447376 NT5C3BQ969T7 300 aa16.93■□□□□ 0.3
SF3A1-204ENST00000447376 TRIM11Q96F44 468 aa16.93■□□□□ 0.3
SF3A1-204ENST00000447376 VCPIP1Q96JH7 1222 aa16.93■□□□□ 0.3
SF3A1-204ENST00000447376 SPACA7Q96KW9 195 aa16.93■□□□□ 0.3
SF3A1-204ENST00000447376 CFAP57Q96MR6 1250 aa16.93■□□□□ 0.3
SF3A1-204ENST00000447376 DNAJC7Q99615 494 aa16.93■□□□□ 0.3
SF3A1-204ENST00000447376 SYT11Q9BT88 431 aa16.93■□□□□ 0.3
SF3A1-204ENST00000447376 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.93■□□□□ 0.3
SF3A1-204ENST00000447376 SIK2Q9H0K1 926 aa16.93■□□□□ 0.3
SF3A1-204ENST00000447376 PIGVQ9NUD9 493 aa16.93■□□□□ 0.3
SF3A1-204ENST00000447376 TMEM59LQ9UK28 342 aa16.93■□□□□ 0.3
SF3A1-204ENST00000447376 SMG5Q9UPR3 1016 aaKnown RBP16.93■□□□□ 0.3
SF3A1-204ENST00000447376 A0A1B0GVM2 712 aa16.92■□□□□ 0.3
SF3A1-204ENST00000447376 TCAF2A6NFQ2 919 aa16.92■□□□□ 0.3
SF3A1-204ENST00000447376 MFAP3LO75121 409 aa16.92■□□□□ 0.3
SF3A1-204ENST00000447376 LUC7L3O95232 432 aaKnown RBP16.92■□□□□ 0.3
SF3A1-204ENST00000447376 HLA-FP30511 346 aa16.92■□□□□ 0.3
SF3A1-204ENST00000447376 WASP42768 502 aa16.92■□□□□ 0.3
SF3A1-204ENST00000447376 CXCR3P49682 368 aa16.92■□□□□ 0.3
SF3A1-204ENST00000447376 SGSHP51688 502 aa16.92■□□□□ 0.3
SF3A1-204ENST00000447376 ST8SIA6P61647 398 aa16.92■□□□□ 0.3
SF3A1-204ENST00000447376 RPS24P62847 133 aaKnown RBP16.92■□□□□ 0.3
SF3A1-204ENST00000447376 ATP11AP98196 1134 aa16.92■□□□□ 0.3
SF3A1-204ENST00000447376 DMWDQ09019 674 aa16.92■□□□□ 0.3
SF3A1-204ENST00000447376 EIF4EBP2Q13542 120 aaPredicted RBP16.92■□□□□ 0.3
SF3A1-204ENST00000447376 CDO1Q16878 200 aa16.92■□□□□ 0.3
SF3A1-204ENST00000447376 FNDC3BQ53EP0 1204 aaKnown RBP16.92■□□□□ 0.3
SF3A1-204ENST00000447376 SERPINA13PQ6UXR4 307 aa16.92■□□□□ 0.3
SF3A1-204ENST00000447376 MON1BQ7L1V2 547 aa16.92■□□□□ 0.3
SF3A1-204ENST00000447376 PHLDB2Q86SQ0 1253 aa16.92■□□□□ 0.3
SF3A1-204ENST00000447376 EMC1Q8N766 993 aa16.92■□□□□ 0.3
SF3A1-204ENST00000447376 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.92■□□□□ 0.3
SF3A1-204ENST00000447376 RUBCNQ92622 972 aa16.92■□□□□ 0.3
SF3A1-204ENST00000447376 PRICKLE1Q96MT3 831 aaPredicted RBP16.92■□□□□ 0.3
SF3A1-204ENST00000447376 ZDHHC4Q9NPG8 344 aa16.92■□□□□ 0.3
SF3A1-204ENST00000447376 POLR3BQ9NW08 1133 aaPredicted RBP16.92■□□□□ 0.3
SF3A1-204ENST00000447376 KIAA1522Q9P206 1035 aaPredicted RBP16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms