RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 UBXN6Q9BZV1 441 aa8.11□□□□□ -1.11
VPS50-204ENST00000438395 SLC6A17Q9H1V8 727 aa8.11□□□□□ -1.11
VPS50-204ENST00000438395 CAPN10Q9HC96 672 aa8.11□□□□□ -1.11
VPS50-204ENST00000438395 ELOVL2Q9NXB9 296 aa8.11□□□□□ -1.11
VPS50-204ENST00000438395 ARMCX3Q9UH62 379 aaPredicted RBP8.11□□□□□ -1.11
VPS50-204ENST00000438395 AGO1Q9UL18 857 aaKnown RBP8.11□□□□□ -1.11
VPS50-204ENST00000438395 PLA2G4CQ9UP65 541 aa8.11□□□□□ -1.11
VPS50-204ENST00000438395 HBS1LQ9Y450 684 aaKnown RBP8.11□□□□□ -1.11
VPS50-204ENST00000438395 USP3Q9Y6I4 520 aa8.11□□□□□ -1.11
VPS50-204ENST00000438395 CFAP47Q6ZTR5 3102 aa8.11□□□□□ -1.11
VPS50-204ENST00000438395 THADAQ6YHU6 1953 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 FAM237AA0A1B0GTK4 181 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 A0A1B0GTW7 788 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 ESPNB1AK53 854 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 WASH3PC4AMC7 463 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 PSMA7O14818 248 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 XPO1O14980 1071 aaKnown RBP8.1□□□□□ -1.11
VPS50-204ENST00000438395 TSPAN3O60637 253 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 CER1O95813 267 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 KLKB1P03952 638 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 CISD3P0C7P0 127 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 PRKCSHP14314 528 aaPredicted RBP8.1□□□□□ -1.11
VPS50-204ENST00000438395 IL12RB1P42701 662 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 SLC11A2P49281 568 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 RAD23BP54727 409 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 FKBP3Q00688 224 aaKnown RBP8.1□□□□□ -1.11
VPS50-204ENST00000438395 ADIGQ0VDE8 80 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 GRIK2Q13002 908 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 CUL2Q13617 745 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 ZNF234Q14588 700 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 GEN1Q17RS7 908 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 TTC31Q49AM3 519 aaPredicted RBP8.1□□□□□ -1.11
VPS50-204ENST00000438395 FYB2Q5VWT5 728 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 ARHGAP17Q68EM7 881 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 IL27RAQ6UWB1 636 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 FAM124AQ86V42 546 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 TMPRSS6Q8IU80 811 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 FMNL3Q8IVF7 1028 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 SLC41A1Q8IVJ1 513 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 NAXDQ8IW45 347 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 SMYD4Q8IYR2 804 aaPredicted RBP8.1□□□□□ -1.11
VPS50-204ENST00000438395 CPXM2Q8N436 756 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 ZNF557Q8N988 423 aaPredicted RBP8.1□□□□□ -1.11
VPS50-204ENST00000438395 KDF1Q8NAX2 398 aaPredicted RBP8.1□□□□□ -1.11
VPS50-204ENST00000438395 SLC4A11Q8NBS3 891 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 CADM4Q8NFZ8 388 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 OR2I1PQ8NGU4 316 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 WFIKKN2Q8TEU8 576 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 SEMA4DQ92854 862 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 SMARCE1Q969G3 411 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 ZNF419Q96HQ0 510 aaPredicted RBP8.1□□□□□ -1.11
VPS50-204ENST00000438395 NUP58Q9BVL2 599 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 LHX5Q9H2C1 402 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 GOLPH3LQ9H4A5 285 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 FBRSQ9HAH7 460 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 DNAAF2Q9NVR5 837 aaKnown RBP8.1□□□□□ -1.11
VPS50-204ENST00000438395 THAP10Q9P2Z0 257 aaPredicted RBP8.1□□□□□ -1.11
VPS50-204ENST00000438395 TSPAN16Q9UKR8 245 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 ZMIZ1Q9ULJ6 1067 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 APOBEC2Q9Y235 224 aaKnown RBP8.1□□□□□ -1.11
VPS50-204ENST00000438395 NFE2L3Q9Y4A8 694 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 NEUROG3Q9Y4Z2 214 aa8.1□□□□□ -1.11
VPS50-204ENST00000438395 ASCC3Q8N3C0 2202 aaKnown RBP8.09□□□□□ -1.11
VPS50-204ENST00000438395 KIAA1549LQ6ZVL6 1849 aa8.09□□□□□ -1.11
VPS50-204ENST00000438395 BCAT2O15382 392 aaPredicted RBP8.09□□□□□ -1.11
VPS50-204ENST00000438395 LATS1O95835 1130 aa8.09□□□□□ -1.11
VPS50-204ENST00000438395 ATP5BP06576 529 aaKnown RBP8.09□□□□□ -1.11
VPS50-204ENST00000438395 PRKCHP24723 683 aa8.09□□□□□ -1.11
VPS50-204ENST00000438395 TPMTP51580 245 aa8.09□□□□□ -1.11
VPS50-204ENST00000438395 ST8SIA6P61647 398 aa8.09□□□□□ -1.11
VPS50-204ENST00000438395 PTSQ03393 145 aa8.09□□□□□ -1.11
VPS50-204ENST00000438395 LRRC63Q05C16 580 aa8.09□□□□□ -1.11
VPS50-204ENST00000438395 PDE4CQ08493 712 aa8.09□□□□□ -1.11
VPS50-204ENST00000438395 LRMPQ12912 555 aa8.09□□□□□ -1.11
VPS50-204ENST00000438395 PNOCQ13519 176 aa8.09□□□□□ -1.11
VPS50-204ENST00000438395 TEAD4Q15561 434 aa8.09□□□□□ -1.11
VPS50-204ENST00000438395 TRIP6Q15654 476 aaKnown RBP8.09□□□□□ -1.11
VPS50-204ENST00000438395 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.09□□□□□ -1.11
VPS50-204ENST00000438395 CCDC40Q4G0X9 1142 aa8.09□□□□□ -1.11
VPS50-204ENST00000438395 RAB41Q5JT25 222 aa8.09□□□□□ -1.11
VPS50-204ENST00000438395 BSPRYQ5W0U4 402 aa8.09□□□□□ -1.11
VPS50-204ENST00000438395 NUGGCQ68CJ6 796 aa8.09□□□□□ -1.11
VPS50-204ENST00000438395 PIP4P1Q86T03 277 aa8.09□□□□□ -1.11
VPS50-204ENST00000438395 AHI1Q8N157 1196 aa8.09□□□□□ -1.11
VPS50-204ENST00000438395 ENGASEQ8NFI3 743 aa8.09□□□□□ -1.11
VPS50-204ENST00000438395 GANCQ8TET4 914 aa8.09□□□□□ -1.11
VPS50-204ENST00000438395 SETD7Q8WTS6 366 aaKnown RBP8.09□□□□□ -1.11
VPS50-204ENST00000438395 EDEM1Q92611 657 aa8.09□□□□□ -1.11
VPS50-204ENST00000438395 TMA16Q96EY4 203 aaKnown RBP8.09□□□□□ -1.11
VPS50-204ENST00000438395 NT5C1BQ96P26 610 aa8.09□□□□□ -1.11
VPS50-204ENST00000438395 GSDMAQ96QA5 445 aa8.09□□□□□ -1.11
VPS50-204ENST00000438395 DDX50Q9BQ39 737 aaKnown RBP8.09□□□□□ -1.11
VPS50-204ENST00000438395 MKRN2Q9H000 416 aaKnown RBP8.09□□□□□ -1.11
VPS50-204ENST00000438395 PCED1AQ9H1Q7 454 aa8.09□□□□□ -1.11
VPS50-204ENST00000438395 GDPD2Q9HCC8 539 aa8.09□□□□□ -1.11
VPS50-204ENST00000438395 METTL14Q9HCE5 456 aaKnown RBP8.09□□□□□ -1.11
VPS50-204ENST00000438395 ABCC13Q9NSE7 274 aa8.09□□□□□ -1.11
VPS50-204ENST00000438395 ABCB8Q9NUT2 735 aa8.09□□□□□ -1.11
VPS50-204ENST00000438395 USP36Q9P275 1121 aaKnown RBP8.09□□□□□ -1.11
VPS50-204ENST00000438395 FBXO10Q9UK96 956 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms