RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 ERVK-10P10266 1014 aa12.14□□□□□ -0.47
CD44-209ENST00000433892 PGAM1P18669 254 aa12.14□□□□□ -0.47
CD44-209ENST00000433892 MLH1P40692 756 aa12.14□□□□□ -0.47
CD44-209ENST00000433892 SLC1A6P48664 564 aa12.14□□□□□ -0.47
CD44-209ENST00000433892 RPL34P49207 117 aaKnown RBP12.14□□□□□ -0.47
CD44-209ENST00000433892 CDK18Q07002 472 aa12.14□□□□□ -0.47
CD44-209ENST00000433892 KLC1Q07866 573 aa12.14□□□□□ -0.47
CD44-209ENST00000433892 ADIGQ0VDE8 80 aa12.14□□□□□ -0.47
CD44-209ENST00000433892 R3HDM1Q15032 1099 aaKnown RBP12.14□□□□□ -0.47
CD44-209ENST00000433892 SLC25A52Q3SY17 297 aa12.14□□□□□ -0.47
CD44-209ENST00000433892 NOTUMQ6P988 496 aa12.14□□□□□ -0.47
CD44-209ENST00000433892 ALKAL1Q6UXT8 129 aa12.14□□□□□ -0.47
CD44-209ENST00000433892 ATG14Q6ZNE5 492 aa12.14□□□□□ -0.47
CD44-209ENST00000433892 PIGZQ86VD9 579 aa12.14□□□□□ -0.47
CD44-209ENST00000433892 WDR75Q8IWA0 830 aaKnown RBP12.14□□□□□ -0.47
CD44-209ENST00000433892 GPRC5AQ8NFJ5 357 aa12.14□□□□□ -0.47
CD44-209ENST00000433892 RNF139Q8WU17 664 aa12.14□□□□□ -0.47
CD44-209ENST00000433892 UCMAQ8WVF2 138 aa12.14□□□□□ -0.47
CD44-209ENST00000433892 ATP2A3Q93084 1043 aa12.14□□□□□ -0.47
CD44-209ENST00000433892 KATNBL1Q9H079 304 aa12.14□□□□□ -0.47
CD44-209ENST00000433892 SYBUQ9NX95 663 aa12.14□□□□□ -0.47
CD44-209ENST00000433892 RBM47A0AV96 593 aaKnown RBP12.13□□□□□ -0.47
CD44-209ENST00000433892 PIRO00625 290 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 OPHN1O60890 802 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 GLRA3O75311 464 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 GPR32O75388 356 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 STK10O94804 968 aaKnown RBP12.13□□□□□ -0.47
CD44-209ENST00000433892 MMP3P08254 477 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 LINGO3P0C6S8 592 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 SMPD1P17405 629 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 GJA5P36382 358 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 SCNN1AP37088 669 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 ACADSBP45954 432 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 TUBP50607 506 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 NME3Q13232 169 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 PCLAFQ15004 111 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 EFHC1Q5JVL4 640 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 RIPOR1Q6ZS17 1223 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 C10orf107Q8IVU9 208 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 HACE1Q8IYU2 909 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 ZNF567Q8N184 647 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 ACMSDQ8TDX5 336 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 FAM136AQ96C01 138 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 HSFY1Q96LI6 401 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 PANX3Q96QZ0 392 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 PRDM12Q9H4Q4 367 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 SLC7A8Q9UHI5 535 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 UBQLN1Q9UMX0 589 aaKnown RBP12.13□□□□□ -0.47
CD44-209ENST00000433892 SMIM28A0A1B0GU29 152 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 KCNK1O00180 336 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 CLDN5O00501 218 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 F7P08709 466 aaPredicted RBP12.13□□□□□ -0.47
CD44-209ENST00000433892 C6orf222P0C671 652 aaPredicted RBP12.13□□□□□ -0.47
CD44-209ENST00000433892 NDUFV1P49821 464 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 GTF2A2P52657 109 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 MRPS35P82673 323 aaKnown RBP12.13□□□□□ -0.47
CD44-209ENST00000433892 TUBB3Q13509 450 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 DNAL1Q4LDG9 190 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 STXBP5Q5T5C0 1151 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 OTUD1Q5VV17 481 aaPredicted RBP12.13□□□□□ -0.47
CD44-209ENST00000433892 RASSF3Q86WH2 238 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 SLC25A41Q8N5S1 370 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 APPL2Q8NEU8 664 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 CFAP61Q8NHU2 1237 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 ATXN7L3BQ96GX2 97 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 SYT15Q9BQS2 421 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 RNF39Q9H2S5 420 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 SLC24A3Q9HC58 644 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 PNPOQ9NVS9 261 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 ZNF358Q9NW07 568 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 TXNDC16Q9P2K2 825 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 ZNF212Q9UDV6 495 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 DCDC2Q9UHG0 476 aa12.13□□□□□ -0.47
CD44-209ENST00000433892 M0QYT0 321 aa12.12□□□□□ -0.47
CD44-209ENST00000433892 USP12O75317 370 aa12.12□□□□□ -0.47
CD44-209ENST00000433892 CIB2O75838 187 aa12.12□□□□□ -0.47
CD44-209ENST00000433892 BEST1O76090 585 aa12.12□□□□□ -0.47
CD44-209ENST00000433892 PRKCGP05129 697 aa12.12□□□□□ -0.47
CD44-209ENST00000433892 SKIP12755 728 aa12.12□□□□□ -0.47
CD44-209ENST00000433892 AOC1P19801 751 aa12.12□□□□□ -0.47
CD44-209ENST00000433892 TYK2P29597 1187 aa12.12□□□□□ -0.47
CD44-209ENST00000433892 ARRB2P32121 409 aa12.12□□□□□ -0.47
CD44-209ENST00000433892 SOX4Q06945 474 aaPredicted RBP12.12□□□□□ -0.47
CD44-209ENST00000433892 TBCCQ15814 346 aa12.12□□□□□ -0.47
CD44-209ENST00000433892 DGKDQ16760 1214 aa12.12□□□□□ -0.47
CD44-209ENST00000433892 C1orf146Q5VVC0 180 aa12.12□□□□□ -0.47
CD44-209ENST00000433892 SYPL2Q5VXT5 272 aa12.12□□□□□ -0.47
CD44-209ENST00000433892 TMEM154Q6P9G4 183 aa12.12□□□□□ -0.47
CD44-209ENST00000433892 NET1Q7Z628 596 aaPredicted RBP12.12□□□□□ -0.47
CD44-209ENST00000433892 POU5F2Q8N7G0 328 aa12.12□□□□□ -0.47
CD44-209ENST00000433892 PPFIBP2Q8ND30 876 aa12.12□□□□□ -0.47
CD44-209ENST00000433892 OR6J1Q8NGC5 347 aa12.12□□□□□ -0.47
CD44-209ENST00000433892 SHKBP1Q8TBC3 707 aa12.12□□□□□ -0.47
CD44-209ENST00000433892 AGAP3Q96P47 875 aa12.12□□□□□ -0.47
CD44-209ENST00000433892 EIF2B3Q9NR50 452 aaKnown RBP12.12□□□□□ -0.47
CD44-209ENST00000433892 KRT82Q9NSB4 513 aa12.12□□□□□ -0.47
CD44-209ENST00000433892 TMEM216Q9P0N5 145 aa12.12□□□□□ -0.47
CD44-209ENST00000433892 RCOR3Q9P2K3 495 aaPredicted RBP12.12□□□□□ -0.47
CD44-209ENST00000433892 APOBEC2Q9Y235 224 aaKnown RBP12.12□□□□□ -0.47
CD44-209ENST00000433892 LRCH1Q9Y2L9 728 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms