RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 SOHLH2Q9NX45 425 aa15.73■□□□□ 0.11
PTPRF-206ENST00000429895 VPS51Q9UID3 782 aa15.73■□□□□ 0.11
PTPRF-206ENST00000429895 ATG7O95352 703 aa15.73■□□□□ 0.11
PTPRF-206ENST00000429895 BMP10O95393 424 aa15.73■□□□□ 0.11
PTPRF-206ENST00000429895 GRK2P25098 689 aa15.73■□□□□ 0.11
PTPRF-206ENST00000429895 CNTFP26441 200 aa15.73■□□□□ 0.11
PTPRF-206ENST00000429895 C1DQ13901 141 aaKnown RBP15.73■□□□□ 0.11
PTPRF-206ENST00000429895 LLGL2Q6P1M3 1020 aa15.73■□□□□ 0.11
PTPRF-206ENST00000429895 MILR1Q7Z6M3 343 aa15.73■□□□□ 0.11
PTPRF-206ENST00000429895 TRAPPC5Q8IUR0 188 aa15.73■□□□□ 0.11
PTPRF-206ENST00000429895 DNERQ8NFT8 737 aa15.73■□□□□ 0.11
PTPRF-206ENST00000429895 EXO5Q9H790 373 aa15.73■□□□□ 0.11
PTPRF-206ENST00000429895 RHBDL2Q9NX52 303 aa15.73■□□□□ 0.11
PTPRF-206ENST00000429895 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.73■□□□□ 0.11
PTPRF-206ENST00000429895 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.73■□□□□ 0.11
PTPRF-206ENST00000429895 SKIV2L2P42285 1042 aaKnown RBP15.73■□□□□ 0.11
PTPRF-206ENST00000429895 CASP12Q6UXS9 341 aa15.73■□□□□ 0.11
PTPRF-206ENST00000429895 ARHGEF19Q8IW93 802 aa15.73■□□□□ 0.11
PTPRF-206ENST00000429895 SKA1Q96BD8 255 aa15.73■□□□□ 0.11
PTPRF-206ENST00000429895 ZCCHC2Q9C0B9 1178 aaKnown RBP15.73■□□□□ 0.11
PTPRF-206ENST00000429895 RNF208Q9H0X6 261 aa15.73■□□□□ 0.11
PTPRF-206ENST00000429895 IL25Q9H293 177 aa15.73■□□□□ 0.11
PTPRF-206ENST00000429895 TRIM43BA6NCK2 446 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 H3BN98 237 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 BTN3A1O00481 513 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 OR6A2O95222 327 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 TALDO1P37837 337 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 ZNF470Q6ECI4 717 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 SLC27A1Q6PCB7 646 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 CYP4X1Q8N118 509 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 GMCL1Q96IK5 515 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 APBA2Q99767 749 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 FHDC1Q9C0D6 1143 aaPredicted RBP15.72■□□□□ 0.11
PTPRF-206ENST00000429895 CDH17Q12864 832 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 OTUD3Q5T2D3 398 aaPredicted RBP15.72■□□□□ 0.11
PTPRF-206ENST00000429895 RNF44Q7L0R7 432 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 REPS2Q8NFH8 660 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 OMDQ99983 421 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 GANQ9H2C0 597 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 A1CFQ9NQ94 594 aaKnown RBP15.72■□□□□ 0.11
PTPRF-206ENST00000429895 SHOC2Q9UQ13 582 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 TBC1D3BA6NDS4 549 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 HLA-DQA2P01906 255 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 NQO1P15559 274 aaKnown RBP15.72■□□□□ 0.11
PTPRF-206ENST00000429895 PSEN2P49810 448 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 ST13P50502 369 aaKnown RBP15.72■□□□□ 0.11
PTPRF-206ENST00000429895 FBXL19Q6PCT2 694 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 ELOA2Q8IYF1 753 aaPredicted RBP15.72■□□□□ 0.11
PTPRF-206ENST00000429895 ABRAQ8N0Z2 381 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 DNAJC1Q96KC8 554 aaKnown RBP15.72■□□□□ 0.11
PTPRF-206ENST00000429895 SIK3Q9Y2K2 1263 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 KANSL1LA0AUZ9 987 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 CCDC154A6NI56 674 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 ZW10O43264 779 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 NDUFS2O75306 463 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 VEGFAP15692 232 aaPredicted RBP15.72■□□□□ 0.11
PTPRF-206ENST00000429895 ADCYAP1R1P41586 468 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 ALKBH2Q6NS38 261 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 ZBTB49Q6ZSB9 765 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 CCDC149Q6ZUS6 474 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 DDHD1Q8NEL9 900 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 ACTL9Q8TC94 416 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 NAT9Q9BTE0 207 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 AP4S1Q9Y587 144 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 VAPBO95292 243 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 AKR1A1P14550 325 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 YBX3P16989 372 aaKnown RBP eCLIP15.72■□□□□ 0.119e-8■■■□□ 19.1
PTPRF-206ENST00000429895 DDR2Q16832 855 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 ZCWPW2Q504Y3 356 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 ZSCAN2Q7Z7L9 614 aaPredicted RBP15.72■□□□□ 0.11
PTPRF-206ENST00000429895 DEFB106AQ8N104 65 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 MCOLN3Q8TDD5 553 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 MRPL39Q9NYK5 338 aaKnown RBP15.72■□□□□ 0.11
PTPRF-206ENST00000429895 ADAM30Q9UKF2 790 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 CRYL1Q9Y2S2 319 aa15.72■□□□□ 0.11
PTPRF-206ENST00000429895 USP31Q70CQ4 1352 aa15.71■□□□□ 0.11
PTPRF-206ENST00000429895 MAGEA13PA6NCF6 341 aa15.71■□□□□ 0.11
PTPRF-206ENST00000429895 NCAM2O15394 837 aa15.71■□□□□ 0.11
PTPRF-206ENST00000429895 RPLP2P05387 115 aaKnown RBP15.71■□□□□ 0.11
PTPRF-206ENST00000429895 ALDH5A1P51649 535 aaPredicted RBP15.71■□□□□ 0.11
PTPRF-206ENST00000429895 DSG4Q86SJ6 1040 aa15.71■□□□□ 0.11
PTPRF-206ENST00000429895 DEFB107AQ8IZN7 70 aa15.71■□□□□ 0.11
PTPRF-206ENST00000429895 SERPINB11Q96P15 392 aa15.71■□□□□ 0.11
PTPRF-206ENST00000429895 MKL2Q9ULH7 1088 aa15.71■□□□□ 0.11
PTPRF-206ENST00000429895 SATB2Q9UPW6 733 aa15.71■□□□□ 0.11
PTPRF-206ENST00000429895 PIK3CDO00329 1044 aa15.71■□□□□ 0.11
PTPRF-206ENST00000429895 KLHL18O94889 574 aa15.71■□□□□ 0.11
PTPRF-206ENST00000429895 PABPC1P11940 636 aaKnown RBP15.71■□□□□ 0.11
PTPRF-206ENST00000429895 VAV1P15498 845 aa15.71■□□□□ 0.11
PTPRF-206ENST00000429895 GPR15P49685 360 aa15.71■□□□□ 0.11
PTPRF-206ENST00000429895 FSCN1Q16658 493 aaKnown RBP15.71■□□□□ 0.11
PTPRF-206ENST00000429895 TCHHL1Q5QJ38 904 aaPredicted RBP15.71■□□□□ 0.11
PTPRF-206ENST00000429895 DDI2Q5TDH0 399 aa15.71■□□□□ 0.11
PTPRF-206ENST00000429895 RSBN1Q5VWQ0 802 aaPredicted RBP15.71■□□□□ 0.11
PTPRF-206ENST00000429895 FAM45BPQ6NSW5 357 aa15.71■□□□□ 0.11
PTPRF-206ENST00000429895 MOXD1Q6UVY6 613 aa15.71■□□□□ 0.11
PTPRF-206ENST00000429895 SUSD6Q92537 303 aa15.71■□□□□ 0.11
PTPRF-206ENST00000429895 TMEM79Q9BSE2 394 aa15.71■□□□□ 0.11
PTPRF-206ENST00000429895 PLAGL2Q9UPG8 496 aa15.71■□□□□ 0.11
PTPRF-206ENST00000429895 CD163L1Q9NR16 1453 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms