RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 TRMT61BQ9BVS5 477 aaKnown RBP10.43□□□□□ -0.74
CD44-207ENST00000425428 ZYG11BQ9C0D3 744 aa10.43□□□□□ -0.74
CD44-207ENST00000425428 IGSF9Q9P2J2 1179 aa10.43□□□□□ -0.74
CD44-207ENST00000425428 PPARGC1AQ9UBK2 798 aaKnown RBP10.43□□□□□ -0.74
CD44-207ENST00000425428 VANGL2Q9ULK5 521 aa10.43□□□□□ -0.74
CD44-207ENST00000425428 SNX12Q9UMY4 172 aa10.43□□□□□ -0.74
CD44-207ENST00000425428 HS3ST4Q9Y661 456 aa10.43□□□□□ -0.74
CD44-207ENST00000425428 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.42□□□□□ -0.74
CD44-207ENST00000425428 GRXCR2A6NFK2 248 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 APOL1O14791 398 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 ZNF189O75820 626 aaPredicted RBP10.42□□□□□ -0.74
CD44-207ENST00000425428 URI1O94763 535 aaPredicted RBP10.42□□□□□ -0.74
CD44-207ENST00000425428 SP100P23497 879 aaPredicted RBP10.42□□□□□ -0.74
CD44-207ENST00000425428 IL1R2P27930 398 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 ETFBP38117 255 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 CKAP4Q07065 602 aaKnown RBP10.42□□□□□ -0.74
CD44-207ENST00000425428 ZNF177Q13360 481 aaPredicted RBP10.42□□□□□ -0.74
CD44-207ENST00000425428 ZNF77Q15935 545 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 ANO4Q32M45 955 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 OTUD1Q5VV17 481 aaPredicted RBP10.42□□□□□ -0.74
CD44-207ENST00000425428 TMCO3Q6UWJ1 677 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 LZTR1Q8N653 840 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 TTC13Q8NBP0 860 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 OSCP1Q8WVF1 389 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 IRF7Q92985 503 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 CD101Q93033 1021 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 BRD9Q9H8M2 597 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 HOMER3Q9NSC5 361 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 KLHL11Q9NVR0 708 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 HAUS2Q9NVX0 235 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 GPATCH2LQ9NWQ4 482 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 PRKAG3Q9UGI9 489 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 CCL26Q9Y258 94 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 H0Y626 953 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 CLDN11O75508 207 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 PRAMEF12O95522 483 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 ATP1A1P05023 1023 aaKnown RBP10.42□□□□□ -0.74
CD44-207ENST00000425428 VIPR2P41587 438 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 GAD2Q05329 585 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 CDH18Q13634 790 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 E2F5Q15329 346 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 PPP2R5EQ16537 467 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 LONRF2Q1L5Z9 754 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 MPP7Q5T2T1 576 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 C6orf118Q5T5N4 469 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 KAZNQ674X7 775 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 SPOCD1Q6ZMY3 1216 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 RFX8Q6ZV50 586 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 ZNF354CQ86Y25 554 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 BBS7Q8IWZ6 715 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 ZDHHC14Q8IZN3 488 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 ARFGAP1Q8N6T3 406 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 KRT35Q92764 455 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 HAUS1Q96CS2 278 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 ZFRQ96KR1 1074 aaKnown RBP10.42□□□□□ -0.74
CD44-207ENST00000425428 WDR24Q96S15 920 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 PEBP4Q96S96 227 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 OSBPL9Q96SU4 736 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 PSMB7Q99436 277 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 KXD1Q9BQD3 176 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 TLR10Q9BXR5 811 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 OSBPL8Q9BZF1 889 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 PCDH18Q9HCL0 1135 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 CALCOCO1Q9P1Z2 691 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 CDH22Q9UJ99 828 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 STOML2Q9UJZ1 356 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 HPCAL4Q9UM19 191 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 EFR3BQ9Y2G0 817 aa10.42□□□□□ -0.74
CD44-207ENST00000425428 CDH23Q9H251 3354 aa10.41□□□□□ -0.74
CD44-207ENST00000425428 DOCK4Q8N1I0 1966 aa10.41□□□□□ -0.74
CD44-207ENST00000425428 A0A1B0GVM2 712 aa10.41□□□□□ -0.74
CD44-207ENST00000425428 TCAF2A6NFQ2 919 aa10.41□□□□□ -0.74
CD44-207ENST00000425428 PI4K2BG5E9Z4 385 aa10.41□□□□□ -0.74
CD44-207ENST00000425428 PGRMC1O00264 195 aaKnown RBP10.41□□□□□ -0.74
CD44-207ENST00000425428 CHADO15335 359 aa10.41□□□□□ -0.74
CD44-207ENST00000425428 TSPAN3O60637 253 aa10.41□□□□□ -0.74
CD44-207ENST00000425428 TBL1XO60907 577 aa10.41□□□□□ -0.74
CD44-207ENST00000425428 LRIG2O94898 1065 aa10.41□□□□□ -0.74
CD44-207ENST00000425428 RHOQP17081 205 aa10.41□□□□□ -0.74
CD44-207ENST00000425428 GOT1P17174 413 aa10.41□□□□□ -0.74
CD44-207ENST00000425428 OR1E1P30953 314 aa10.41□□□□□ -0.74
CD44-207ENST00000425428 GDI1P31150 447 aa10.41□□□□□ -0.74
CD44-207ENST00000425428 PEX5P50542 639 aa10.41□□□□□ -0.74
CD44-207ENST00000425428 CDH4P55283 916 aa10.41□□□□□ -0.74
CD44-207ENST00000425428 PFKPQ01813 784 aa10.41□□□□□ -0.74
CD44-207ENST00000425428 DPYSL3Q14195 570 aa10.41□□□□□ -0.74
CD44-207ENST00000425428 ANKRD20A8PQ5CZ79 823 aa10.41□□□□□ -0.74
CD44-207ENST00000425428 PIK3R6Q5UE93 754 aa10.41□□□□□ -0.74
CD44-207ENST00000425428 PAPD7Q5XG87 772 aaKnown RBP10.41□□□□□ -0.74
CD44-207ENST00000425428 TANGO2Q6ICL3 276 aa10.41□□□□□ -0.74
CD44-207ENST00000425428 Q6ZNB5 142 aa10.41□□□□□ -0.74
CD44-207ENST00000425428 TPGS1Q6ZTW0 290 aa10.41□□□□□ -0.74
CD44-207ENST00000425428 MNS1Q8NEH6 495 aa10.41□□□□□ -0.74
CD44-207ENST00000425428 NSMCE1Q8WV22 266 aa10.41□□□□□ -0.74
CD44-207ENST00000425428 ATXN2LQ8WWM7 1075 aaKnown RBP10.41□□□□□ -0.74
CD44-207ENST00000425428 P3H4Q92791 437 aa10.41□□□□□ -0.74
CD44-207ENST00000425428 KCTD15Q96SI1 283 aaPredicted RBP10.41□□□□□ -0.74
CD44-207ENST00000425428 BBS2Q9BXC9 721 aa10.41□□□□□ -0.74
CD44-207ENST00000425428 SPHK2Q9NRA0 654 aa10.41□□□□□ -0.74
CD44-207ENST00000425428 RAD54BQ9Y620 910 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms