RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 SDCBP2Q9H190 292 aa16.56■□□□□ 0.24
PCDH1-203ENST00000394536 TNFSF13BQ9Y275 285 aa16.56■□□□□ 0.24
PCDH1-203ENST00000394536 C3orf70A6NLC5 250 aaPredicted RBP16.55■□□□□ 0.24
PCDH1-203ENST00000394536 TRIM13O60858 407 aa16.55■□□□□ 0.24
PCDH1-203ENST00000394536 SEL1L3Q68CR1 1132 aa16.55■□□□□ 0.24
PCDH1-203ENST00000394536 ZNF772Q68DY9 489 aaPredicted RBP16.55■□□□□ 0.24
PCDH1-203ENST00000394536 PACS1Q6VY07 963 aa16.55■□□□□ 0.24
PCDH1-203ENST00000394536 DHDDSQ86SQ9 333 aa16.55■□□□□ 0.24
PCDH1-203ENST00000394536 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.55■□□□□ 0.24
PCDH1-203ENST00000394536 EDEM1Q92611 657 aa16.55■□□□□ 0.24
PCDH1-203ENST00000394536 GMLQ99445 158 aa16.55■□□□□ 0.24
PCDH1-203ENST00000394536 APBA2Q99767 749 aa16.55■□□□□ 0.24
PCDH1-203ENST00000394536 EFHD1Q9BUP0 239 aa16.55■□□□□ 0.24
PCDH1-203ENST00000394536 NIFKQ9BYG3 293 aaKnown RBP16.55■□□□□ 0.24
PCDH1-203ENST00000394536 CAAP1Q9H8G2 361 aa16.55■□□□□ 0.24
PCDH1-203ENST00000394536 DYNC1LI2O43237 492 aaPredicted RBP16.55■□□□□ 0.24
PCDH1-203ENST00000394536 CLPTM1O96005 669 aa16.55■□□□□ 0.24
PCDH1-203ENST00000394536 THRAP10827 490 aa16.55■□□□□ 0.24
PCDH1-203ENST00000394536 TUBP50607 506 aa16.55■□□□□ 0.24
PCDH1-203ENST00000394536 ABCE1P61221 599 aaKnown RBP16.55■□□□□ 0.24
PCDH1-203ENST00000394536 POTEAQ6S8J7 498 aa16.55■□□□□ 0.24
PCDH1-203ENST00000394536 C4orf22Q6V702 233 aa16.55■□□□□ 0.24
PCDH1-203ENST00000394536 ELMO2Q96JJ3 720 aa16.55■□□□□ 0.24
PCDH1-203ENST00000394536 SETD4Q9NVD3 440 aa16.55■□□□□ 0.24
PCDH1-203ENST00000394536 LIN7AO14910 233 aaPredicted RBP16.55■□□□□ 0.24
PCDH1-203ENST00000394536 AHCYL1O43865 530 aa16.55■□□□□ 0.24
PCDH1-203ENST00000394536 SIN3BO75182 1162 aa16.55■□□□□ 0.24
PCDH1-203ENST00000394536 NME5P56597 212 aa16.55■□□□□ 0.24
PCDH1-203ENST00000394536 PDE1CQ14123 709 aaPredicted RBP16.55■□□□□ 0.24
PCDH1-203ENST00000394536 POU6F1Q14863 301 aa16.55■□□□□ 0.24
PCDH1-203ENST00000394536 MAP1SQ66K74 1059 aaPredicted RBP16.55■□□□□ 0.24
PCDH1-203ENST00000394536 C7orf26Q96N11 449 aa16.55■□□□□ 0.24
PCDH1-203ENST00000394536 SYBUQ9NX95 663 aa16.55■□□□□ 0.24
PCDH1-203ENST00000394536 TMEM216Q9P0N5 145 aa16.55■□□□□ 0.24
PCDH1-203ENST00000394536 CDYLQ9Y232 598 aa16.55■□□□□ 0.24
PCDH1-203ENST00000394536 PCDHA11Q9Y5I1 949 aa16.55■□□□□ 0.24
PCDH1-203ENST00000394536 A0A0A0MRY4 1105 aa16.54■□□□□ 0.24
PCDH1-203ENST00000394536 CAPN8A6NHC0 703 aa16.54■□□□□ 0.24
PCDH1-203ENST00000394536 MCF2P10911 925 aa16.54■□□□□ 0.24
PCDH1-203ENST00000394536 PLK1P53350 603 aa16.54■□□□□ 0.24
PCDH1-203ENST00000394536 ROR2Q01974 943 aaKnown RBP16.54■□□□□ 0.24
PCDH1-203ENST00000394536 WASHC5Q12768 1159 aa16.54■□□□□ 0.24
PCDH1-203ENST00000394536 NIPA2Q8N8Q9 360 aa16.54■□□□□ 0.24
PCDH1-203ENST00000394536 ANKLE1Q8NAG6 615 aa16.54■□□□□ 0.24
PCDH1-203ENST00000394536 SPATA13Q96N96 652 aa16.54■□□□□ 0.24
PCDH1-203ENST00000394536 MRPL1Q9BYD6 325 aaKnown RBP16.54■□□□□ 0.24
PCDH1-203ENST00000394536 MMADHCQ9H3L0 296 aaPredicted RBP16.54■□□□□ 0.24
PCDH1-203ENST00000394536 TSHRP16473 764 aa16.54■□□□□ 0.24
PCDH1-203ENST00000394536 CNTFP26441 200 aa16.54■□□□□ 0.24
PCDH1-203ENST00000394536 BCAT1P54687 386 aa16.54■□□□□ 0.24
PCDH1-203ENST00000394536 MAP3K7CLP57077 242 aa16.54■□□□□ 0.24
PCDH1-203ENST00000394536 CYLC2Q14093 348 aaPredicted RBP16.54■□□□□ 0.24
PCDH1-203ENST00000394536 DLG2Q15700 870 aa16.54■□□□□ 0.24
PCDH1-203ENST00000394536 PPP1R15BQ5SWA1 713 aa16.54■□□□□ 0.24
PCDH1-203ENST00000394536 ITPRIPL1Q6GPH6 555 aa16.54■□□□□ 0.24
PCDH1-203ENST00000394536 BNC2Q6ZN30 1099 aaPredicted RBP16.54■□□□□ 0.24
PCDH1-203ENST00000394536 P2RY11Q96G91 374 aa16.54■□□□□ 0.24
PCDH1-203ENST00000394536 OMDQ99983 421 aa16.54■□□□□ 0.24
PCDH1-203ENST00000394536 NAT9Q9BTE0 207 aa16.54■□□□□ 0.24
PCDH1-203ENST00000394536 C10orf71Q711Q0 1435 aa16.54■□□□□ 0.24
PCDH1-203ENST00000394536 H3BRB1 525 aa16.54■□□□□ 0.24
PCDH1-203ENST00000394536 NOL3O60936 208 aaKnown RBP16.54■□□□□ 0.24
PCDH1-203ENST00000394536 PIGNO95427 931 aa16.54■□□□□ 0.24
PCDH1-203ENST00000394536 GNAZP19086 355 aa16.54■□□□□ 0.24
PCDH1-203ENST00000394536 CRHR1P34998 444 aa16.54■□□□□ 0.24
PCDH1-203ENST00000394536 SERPINB8P50452 374 aa16.54■□□□□ 0.24
PCDH1-203ENST00000394536 OLIG2Q13516 323 aa16.54■□□□□ 0.24
PCDH1-203ENST00000394536 LAMB3Q13751 1172 aa16.54■□□□□ 0.24
PCDH1-203ENST00000394536 ARFGAP1Q8N6T3 406 aa16.54■□□□□ 0.24
PCDH1-203ENST00000394536 KYQ8NBH2 561 aa16.54■□□□□ 0.24
PCDH1-203ENST00000394536 GABPB2Q8TAK5 448 aaPredicted RBP16.54■□□□□ 0.24
PCDH1-203ENST00000394536 PRPF18Q99633 342 aaKnown RBP16.54■□□□□ 0.24
PCDH1-203ENST00000394536 UPF3AQ9H1J1 476 aaKnown RBP16.54■□□□□ 0.24
PCDH1-203ENST00000394536 EBF3Q9H4W6 596 aa16.54■□□□□ 0.24
PCDH1-203ENST00000394536 TUT1Q9H6E5 874 aaKnown RBP16.54■□□□□ 0.24
PCDH1-203ENST00000394536 PHLPP1O60346 1717 aa16.53■□□□□ 0.24
PCDH1-203ENST00000394536 PEX2P28328 305 aa16.53■□□□□ 0.24
PCDH1-203ENST00000394536 PAN2Q504Q3 1202 aaKnown RBP16.53■□□□□ 0.24
PCDH1-203ENST00000394536 C16orf89Q6UX73 402 aa16.53■□□□□ 0.24
PCDH1-203ENST00000394536 C18orf25Q96B23 403 aaPredicted RBP16.53■□□□□ 0.24
PCDH1-203ENST00000394536 CERS2Q96G23 380 aa16.53■□□□□ 0.24
PCDH1-203ENST00000394536 VPS39Q96JC1 886 aa16.53■□□□□ 0.24
PCDH1-203ENST00000394536 PGLYRP2Q96PD5 576 aa16.53■□□□□ 0.24
PCDH1-203ENST00000394536 CSPG4P5Q96PW8 444 aa16.53■□□□□ 0.24
PCDH1-203ENST00000394536 SEMA6AQ9H2E6 1030 aa16.53■□□□□ 0.24
PCDH1-203ENST00000394536 NMRAL1Q9HBL8 299 aa16.53■□□□□ 0.24
PCDH1-203ENST00000394536 STYXL1Q9Y6J8 313 aa16.53■□□□□ 0.24
PCDH1-203ENST00000394536 PGAM1P18669 254 aa16.53■□□□□ 0.24
PCDH1-203ENST00000394536 BST2Q10589 180 aaKnown RBP16.53■□□□□ 0.24
PCDH1-203ENST00000394536 NRF1Q16656 503 aa16.53■□□□□ 0.24
PCDH1-203ENST00000394536 CELF3Q5SZQ8 465 aaKnown RBP16.53■□□□□ 0.24
PCDH1-203ENST00000394536 LRRC43Q8N309 656 aa16.53■□□□□ 0.24
PCDH1-203ENST00000394536 RNF139Q8WU17 664 aa16.53■□□□□ 0.24
PCDH1-203ENST00000394536 PANX3Q96QZ0 392 aa16.53■□□□□ 0.24
PCDH1-203ENST00000394536 POPDC2Q9HBU9 364 aa16.53■□□□□ 0.24
PCDH1-203ENST00000394536 ITGA11Q9UKX5 1188 aa16.53■□□□□ 0.24
PCDH1-203ENST00000394536 SNX13Q9Y5W8 968 aa16.53■□□□□ 0.24
PCDH1-203ENST00000394536 EEF1B2P24534 225 aaKnown RBP16.53■□□□□ 0.24
PCDH1-203ENST00000394536 RPS12P25398 132 aaKnown RBP16.53■□□□□ 0.24
PCDH1-203ENST00000394536 TMEM259Q4ZIN3 620 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms