RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 RSAD1Q9HA92 442 aa8.92□□□□□ -0.98
LIG3-202ENST00000378526 TMEM216Q9P0N5 145 aa8.92□□□□□ -0.98
LIG3-202ENST00000378526 CHORDC1Q9UHD1 332 aaPredicted RBP8.92□□□□□ -0.98
LIG3-202ENST00000378526 SYNJ2O15056 1496 aa8.92□□□□□ -0.98
LIG3-202ENST00000378526 CC2D2AQ9P2K1 1620 aa8.92□□□□□ -0.98
LIG3-202ENST00000378526 ITGB3P05106 788 aa8.92□□□□□ -0.98
LIG3-202ENST00000378526 HOXB7P09629 217 aa8.92□□□□□ -0.98
LIG3-202ENST00000378526 DRAP1Q14919 205 aaPredicted RBP8.92□□□□□ -0.98
LIG3-202ENST00000378526 FAM92BQ6ZTR7 304 aa8.92□□□□□ -0.98
LIG3-202ENST00000378526 MTSS1LQ765P7 747 aa8.92□□□□□ -0.98
LIG3-202ENST00000378526 ZNF276Q8N554 614 aa8.92□□□□□ -0.98
LIG3-202ENST00000378526 SLC35G2Q8TBE7 412 aa8.92□□□□□ -0.98
LIG3-202ENST00000378526 C11orf24Q96F05 449 aaPredicted RBP8.92□□□□□ -0.98
LIG3-202ENST00000378526 AS3MTQ9HBK9 375 aa8.92□□□□□ -0.98
LIG3-202ENST00000378526 TAS2R1Q9NYW7 299 aa8.92□□□□□ -0.98
LIG3-202ENST00000378526 PADI2Q9Y2J8 665 aa8.92□□□□□ -0.98
LIG3-202ENST00000378526 KLHL33A6NCF5 533 aa8.92□□□□□ -0.98
LIG3-202ENST00000378526 CAV3P56539 151 aa8.92□□□□□ -0.98
LIG3-202ENST00000378526 MAPK7Q13164 816 aa8.92□□□□□ -0.98
LIG3-202ENST00000378526 PDK1Q15118 436 aa8.92□□□□□ -0.98
LIG3-202ENST00000378526 SPATA18Q8TC71 538 aa8.92□□□□□ -0.98
LIG3-202ENST00000378526 HELQQ8TDG4 1101 aa8.92□□□□□ -0.98
LIG3-202ENST00000378526 SSH3Q8TE77 659 aa8.92□□□□□ -0.98
LIG3-202ENST00000378526 MARK1Q9P0L2 795 aa8.92□□□□□ -0.98
LIG3-202ENST00000378526 MAP10Q9P2G4 905 aa8.92□□□□□ -0.98
LIG3-202ENST00000378526 BARX2Q9UMQ3 279 aaPredicted RBP8.92□□□□□ -0.98
LIG3-202ENST00000378526 ANXA1P04083 346 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 HPGDP15428 266 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 SLC1A6P48664 564 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 TPTEP56180 551 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 BIKQ13323 160 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 RBM43Q6ZSC3 357 aaKnown RBP8.91□□□□□ -0.98
LIG3-202ENST00000378526 BHLHE22Q8NFJ8 381 aaPredicted RBP8.91□□□□□ -0.98
LIG3-202ENST00000378526 RAB2BQ8WUD1 216 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 FIG4Q92562 907 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 CRISPLD1Q9H336 500 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 ABT1Q9ULW3 272 aaKnown RBP8.91□□□□□ -0.98
LIG3-202ENST00000378526 MRPS7Q9Y2R9 242 aaKnown RBP8.91□□□□□ -0.98
LIG3-202ENST00000378526 SH3TC1Q8TE82 1336 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 TRAPPC3O43617 180 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 ASMTLO95671 621 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 ATP5F1P24539 256 aaPredicted RBP8.91□□□□□ -0.98
LIG3-202ENST00000378526 MAB21L1Q13394 359 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 AKAP4Q5JQC9 854 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 ARHGAP27Q6ZUM4 889 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 DAW1Q8N136 415 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 BPIFB6Q8NFQ5 453 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 RP9Q8TA86 221 aaKnown RBP8.91□□□□□ -0.98
LIG3-202ENST00000378526 GANCQ8TET4 914 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 SYN2Q92777 582 aaPredicted RBP8.91□□□□□ -0.98
LIG3-202ENST00000378526 MSTO1Q9BUK6 570 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 TRIM9Q9C026 710 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 PTGFRNQ9P2B2 879 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 KIF20BQ96Q89 1820 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 RPA1P27694 616 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 MNDAP41218 407 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 CCNG1P51959 295 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 FASTKQ14296 549 aaKnown RBP8.91□□□□□ -0.98
LIG3-202ENST00000378526 CARTPTQ16568 116 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 STRIP1Q5VSL9 837 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 RNF43Q68DV7 783 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 PTRHD1Q6GMV3 140 aaKnown RBP8.91□□□□□ -0.98
LIG3-202ENST00000378526 ZNF438Q7Z4V0 828 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 FAM160B2Q86V87 743 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 PROSER2Q86WR7 435 aaPredicted RBP8.91□□□□□ -0.98
LIG3-202ENST00000378526 KIF18BQ86Y91 864 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 PLEKHF1Q96S99 279 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 HGH1Q9BTY7 390 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 OSBPL3Q9H4L5 887 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 UBQLN2Q9UHD9 624 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 GMPPBQ9Y5P6 360 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 GAPVD1Q14C86 1478 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 CAMTA2O94983 1202 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 ANPEPP15144 967 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 PDGFRAP16234 1089 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 ZNF37AP17032 561 aaPredicted RBP8.91□□□□□ -0.98
LIG3-202ENST00000378526 TPI1P60174 286 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 TGM3Q08188 693 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 NIPAL1Q6NVV3 410 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 WDR59Q6PJI9 974 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 GRAMD1CQ8IYS0 662 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 SEPT5Q99719 369 aaPredicted RBP8.91□□□□□ -0.98
LIG3-202ENST00000378526 SLC25A23Q9BV35 468 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 ZNF471Q9BX82 626 aaPredicted RBP8.91□□□□□ -0.98
LIG3-202ENST00000378526 INO80BQ9C086 356 aaPredicted RBP8.91□□□□□ -0.98
LIG3-202ENST00000378526 TREM1Q9NP99 234 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 SETD4Q9NVD3 440 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 LIMD1Q9UGP4 676 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 DYRK1BQ9Y463 629 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 MAU2Q9Y6X3 613 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 ADGRL1O94910 1474 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 RRN3P2A6NIE6 340 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 MUSKO15146 869 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 UNC5CO95185 931 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 DCKP27707 260 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 HIBADHP31937 336 aaKnown RBP8.91□□□□□ -0.98
LIG3-202ENST00000378526 CDK7P50613 346 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 CDK9P50750 372 aaKnown RBP8.91□□□□□ -0.98
LIG3-202ENST00000378526 NAPEPLDQ6IQ20 393 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 REXO1L1PQ8IX06 675 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms