RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 TRIM3O75382 744 aaPredicted RBP11.88□□□□□ -0.51
VPS13A-205ENST00000376636 RARGP13631 454 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 ATP5F1P24539 256 aaPredicted RBP11.88□□□□□ -0.51
VPS13A-205ENST00000376636 CCR4P51679 360 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 ARF3P61204 181 aaPredicted RBP11.88□□□□□ -0.51
VPS13A-205ENST00000376636 ARF1P84077 181 aaKnown RBP11.88□□□□□ -0.51
VPS13A-205ENST00000376636 STRIP1Q5VSL9 837 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 WDR93Q6P2C0 686 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 HPDLQ96IR7 371 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 ATP7AQ04656 1500 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 MYCP01106 439 aaPredicted RBP11.88□□□□□ -0.51
VPS13A-205ENST00000376636 ME2P23368 584 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 PTPN3P26045 913 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 SMIM11AP58511 58 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 PDGFRBP09619 1106 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 PDHA2P29803 388 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 MTAPQ13126 283 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 NR1I3Q14994 352 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 C1orf189Q5VU69 101 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 GPAT2Q6NUI2 795 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 GRPEL2Q8TAA5 225 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 EPB41L1Q9H4G0 881 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 AASDHPPTQ9NRN7 309 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 HBS1LQ9Y450 684 aaKnown RBP11.88□□□□□ -0.51
VPS13A-205ENST00000376636 NEDD4P46934 1319 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 CASP1P29466 404 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 IRGCQ6NXR0 463 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 TPCN2Q8NHX9 752 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 TMEM47Q9BQJ4 181 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 KBTBD13C9JR72 458 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 LSM1O15116 133 aaKnown RBP11.87□□□□□ -0.51
VPS13A-205ENST00000376636 PGRMC2O15173 223 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 F9P00740 461 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 GHRP10912 638 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 GPSM2P81274 684 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 TUBA3CQ13748 450 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 GRB14Q14449 540 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 GAL3ST3Q96A11 431 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 PAFAH2Q99487 392 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 XPR1Q9UBH6 696 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 C3orf18Q9UK00 162 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 DHFRP00374 187 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 UNC5CLQ8IV45 518 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 ZHX1-C8orf76Q96EF9 292 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 ZC3H10Q96K80 434 aaKnown RBP11.87□□□□□ -0.51
VPS13A-205ENST00000376636 WRNIP1Q96S55 665 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 SAR1AQ9NR31 198 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 RAP1GAPP47736 663 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 STOX1Q6ZVD7 989 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 POC5Q8NA72 575 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 ELL3Q9HB65 397 aaPredicted RBP11.87□□□□□ -0.51
VPS13A-205ENST00000376636 ABCB10Q9NRK6 738 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 TBC1D13Q9NVG8 400 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 STOX2Q9P2F5 926 aaPredicted RBP11.87□□□□□ -0.51
VPS13A-205ENST00000376636 COMMD3-BMI1R4GMX3 469 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 RGS10O43665 173 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 TNNI3P19429 210 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 NPR2P20594 1047 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 UGT1A5P35504 534 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 MSLNQ13421 630 aaPredicted RBP11.87□□□□□ -0.51
VPS13A-205ENST00000376636 RIPK1Q13546 671 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 MTF1Q14872 753 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 ZNF772Q68DY9 489 aaPredicted RBP11.87□□□□□ -0.51
VPS13A-205ENST00000376636 CIAPIN1Q6FI81 312 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 GALNT18Q6P9A2 607 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 OR6J1Q8NGC5 347 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 OXNAD1Q96HP4 312 aaPredicted RBP11.87□□□□□ -0.51
VPS13A-205ENST00000376636 PLGRKTQ9HBL7 147 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 RAVER2Q9HCJ3 691 aaKnown RBP11.87□□□□□ -0.51
VPS13A-205ENST00000376636 ABI2Q9NYB9 513 aaPredicted RBP11.87□□□□□ -0.51
VPS13A-205ENST00000376636 ALG6Q9Y672 507 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 SLC2A4P14672 509 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 PKN1Q16512 942 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 ZFP69Q49AA0 526 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 XKR3Q5GH77 459 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 CCSAPQ6IQ19 270 aaPredicted RBP11.87□□□□□ -0.51
VPS13A-205ENST00000376636 DSG4Q86SJ6 1040 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 TMEM159Q96B96 161 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 BHLHE41Q9C0J9 482 aaPredicted RBP11.87□□□□□ -0.51
VPS13A-205ENST00000376636 SSR3Q9UNL2 185 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 PBRM1Q86U86 1689 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 MED24O75448 989 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 CPA3P15088 417 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 RPL9P32969 192 aaKnown RBP11.87□□□□□ -0.51
VPS13A-205ENST00000376636 GJA8P48165 433 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 MGAT5BQ3V5L5 792 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 SLFN11Q7Z7L1 901 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 SRP68Q9UHB9 627 aaKnown RBP11.87□□□□□ -0.51
VPS13A-205ENST00000376636 KDM6AO15550 1401 aaPredicted RBP11.87□□□□□ -0.51
VPS13A-205ENST00000376636 ZNF432O94892 652 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 ACADMP11310 421 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 ACOT2P49753 483 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 AMPD2Q01433 879 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 MPP3Q13368 585 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 ZNHIT3Q15649 155 aaPredicted RBP11.87□□□□□ -0.51
VPS13A-205ENST00000376636 TTC29Q8NA56 475 aaPredicted RBP11.87□□□□□ -0.51
VPS13A-205ENST00000376636 EGFRP00533 1210 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 DENND5AQ6IQ26 1287 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 POTEHQ6S545 545 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 ZNF276Q8N554 614 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms