RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 ISOC1Q96CN7 298 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 RCN3Q96D15 328 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 PGBD4Q96DM1 585 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 VPS50Q96JG6 964 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 COX4I2Q96KJ9 171 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 ZNF597Q96LX8 424 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 WRNIP1Q96S55 665 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 EBNA1BP2Q99848 306 aaKnown RBP6.97□□□□□ -1.29
VPS39-202ENST00000348544 NEURL2Q9BR09 285 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 DCUN1D5Q9BTE7 237 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 SLC4A5Q9BY07 1137 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 MAF1Q9H063 256 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 BRD8Q9H0E9 1235 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 SEMA6AQ9H2E6 1030 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 ARMC7Q9H6L4 198 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 COQ10BQ9H8M1 238 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 ANKEF1Q9NU02 776 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 MOCS1Q9NZB8 636 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 KIAA1522Q9P206 1035 aaPredicted RBP6.97□□□□□ -1.29
VPS39-202ENST00000348544 PAK5Q9P286 719 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 COPG2Q9UBF2 871 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 COQ6Q9Y2Z9 468 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 NR2E3Q9Y5X4 410 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 PSAT1Q9Y617 370 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 GOLGA8QA0A0J9YX86 632 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 ARHGEF37A1IGU5 675 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 HTR3EA5X5Y0 456 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 GOLGA8OA6NCC3 632 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 WDR64B1ANS9 1081 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 GOLGA8NF8WBI6 632 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 NOP56O00567 594 aaKnown RBP6.97□□□□□ -1.29
VPS39-202ENST00000348544 NFIBO00712 420 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 CFLARO15519 480 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 XPOTO43592 962 aaKnown RBP6.97□□□□□ -1.29
VPS39-202ENST00000348544 BCAS2O75934 225 aaPredicted RBP6.97□□□□□ -1.29
VPS39-202ENST00000348544 ENDOD1O94919 500 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 ATE1O95260 518 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 TRUB2O95900 331 aaKnown RBP6.97□□□□□ -1.29
VPS39-202ENST00000348544 RALBP11234 206 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 FGFR3P22607 806 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 GRK2P25098 689 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 HSPA1LP34931 641 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 LIG4P49917 911 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 HSD17B4P51659 736 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 HSPA2P54652 639 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 NUP107P57740 925 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 MTMR1Q13613 665 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 IKBKEQ14164 716 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 DCAF6Q58WW2 860 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 TMEM53Q6P2H8 277 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 PTAR1Q7Z6K3 402 aaPredicted RBP6.97□□□□□ -1.29
VPS39-202ENST00000348544 ZSCAN18Q8TBC5 510 aaPredicted RBP6.97□□□□□ -1.29
VPS39-202ENST00000348544 AGR3Q8TD06 166 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 PDCD6IPQ8WUM4 868 aaKnown RBP6.97□□□□□ -1.29
VPS39-202ENST00000348544 ATP6V1E2Q96A05 226 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 RTP4Q96DX8 246 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 MOCOSQ96EN8 888 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 ZDHHC15Q96MV8 337 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 SERPINI1Q99574 410 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 CGRRF1Q99675 332 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 SLC29A1Q99808 456 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 IMPG2Q9BZV3 1241 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 CDH19Q9H159 772 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 WDR55Q9H6Y2 383 aaPredicted RBP6.97□□□□□ -1.29
VPS39-202ENST00000348544 XPNPEP3Q9NQH7 507 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 VPS28Q9UK41 221 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 AGO2Q9UKV8 859 aaKnown RBP6.97□□□□□ -1.29
VPS39-202ENST00000348544 CNOT11Q9UKZ1 510 aaKnown RBP6.97□□□□□ -1.29
VPS39-202ENST00000348544 CDC14AQ9UNH5 594 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 PCDHA11Q9Y5I1 949 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 SQORQ9Y6N5 450 aa6.97□□□□□ -1.29
VPS39-202ENST00000348544 LRRC37AA6NMS7 1700 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 BBOX1O75936 387 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 CSPG5O95196 566 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 STBD1O95210 358 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 METTL18O95568 372 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 EDN1P05305 212 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 INHBBP09529 407 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 EIF2AK2P19525 551 aaKnown RBP6.96□□□□□ -1.29
VPS39-202ENST00000348544 CD247P20963 164 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 ACADVLP49748 655 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 BCAP31P51572 246 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 PRKG1Q13976 671 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 WDR78Q5VTH9 848 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 OGFOD2Q6N063 350 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 NANOGP8Q6NSW7 305 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 C16orf89Q6UX73 402 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 NIPA1Q7RTP0 329 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 CLVS1Q8IUQ0 354 aaPredicted RBP6.96□□□□□ -1.29
VPS39-202ENST00000348544 MYO1HQ8N1T3 1032 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 PQLC3Q8N755 202 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 RNF169Q8NCN4 708 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 FNIP1Q8TF40 1166 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 SLC7A3Q8WY07 619 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 EME1Q96AY2 570 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 LRRC39Q96DD0 335 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 PPP1R36Q96LQ0 422 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 CPXM1Q96SM3 734 aa6.96□□□□□ -1.29
VPS39-202ENST00000348544 HNRNPABQ99729 332 aaKnown RBP6.96□□□□□ -1.29
VPS39-202ENST00000348544 FERMT1Q9BQL6 677 aa6.96□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms