RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 UBXN11Q5T124 520 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 COMMD2Q86X83 199 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 ELMOD2Q8IZ81 293 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 ITFG1Q8TB96 612 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 KLHL5Q96PQ7 755 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 SHCBP1LQ9BZQ2 653 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 REEP1Q9H902 201 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 AS3MTQ9HBK9 375 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 TBCCD1Q9NVR7 557 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 CBY1Q9Y3M2 126 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 TMEM114B3SHH9 223 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 TCEA3O75764 348 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 HIST1H2AGP0C0S8 130 aaPredicted RBP6.29□□□□□ -1.4
VCAN-203ENST00000343200 PLA2G4BP0C869 781 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 HSD3B1P14060 373 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 HIST1H2ADP20671 130 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 RGS6P49758 472 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 MRPS22P82650 360 aaKnown RBP6.29□□□□□ -1.4
VCAN-203ENST00000343200 TFDP3Q5H9I0 405 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 GPATCH4Q5T3I0 446 aaKnown RBP6.29□□□□□ -1.4
VCAN-203ENST00000343200 OR52K2Q8NGK3 314 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 HIST1H2AHQ96KK5 128 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 HIST1H2AJQ99878 128 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 ZNF577Q9BSK1 485 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 H2AFJQ9BTM1 129 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 RPF1Q9H9Y2 349 aaKnown RBP6.29□□□□□ -1.4
VCAN-203ENST00000343200 SLC39A1Q9NY26 324 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 TBC1D14Q9P2M4 693 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 RPS6KA6Q9UK32 745 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 PRAMEF33A0A0G2JMD5 474 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 A0A1W2PQJ5 194 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 KLHL33A6NCF5 533 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 CLDN25C9JDP6 229 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 TULP2O00295 520 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 PRAMEF10O60809 474 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 RECQL5O94762 991 aaPredicted RBP6.29□□□□□ -1.4
VCAN-203ENST00000343200 VCLP18206 1134 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 GRHL2Q6ISB3 625 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 VN1R5Q7Z5H4 357 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 REXO1L1PQ8IX06 675 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 C10orf53Q8N6V4 93 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 TPD52L3Q96J77 140 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 RNF145Q96MT1 663 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 SLC38A2Q96QD8 506 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 BABAM1Q9NWV8 329 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 TOR4AQ9NXH8 423 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 RNF112Q9ULX5 631 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 PLCH2O75038 1416 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 SOAT2O75908 522 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 PRKCBP05771 671 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 GRK3P35626 688 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 SLC1A6P48664 564 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 MAD2L1Q13257 205 aaPredicted RBP6.29□□□□□ -1.4
VCAN-203ENST00000343200 PLA2G4EQ3MJ16 856 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 GPR107Q5VW38 600 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 TMC4Q7Z404 712 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 HIPK1Q86Z02 1210 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 SYN2Q92777 582 aaPredicted RBP6.29□□□□□ -1.4
VCAN-203ENST00000343200 RAB6BQ9NRW1 208 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 EMILIN1Q9Y6C2 1016 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 PPRC1Q5VV67 1664 aaKnown RBP6.29□□□□□ -1.4
VCAN-203ENST00000343200 ABCC4O15439 1325 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 KIAA0232Q92628 1395 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 SLC16A3O15427 465 aaKnown RBP6.29□□□□□ -1.4
VCAN-203ENST00000343200 CRTAPO75718 401 aaPredicted RBP6.29□□□□□ -1.4
VCAN-203ENST00000343200 HOXB7P09629 217 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 PSKH1P11801 424 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 MAPK12P53778 367 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 RGS1Q08116 209 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 RFX4Q33E94 735 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 PITRM1Q5JRX3 1037 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 UTS2BQ765I0 119 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 RTKN2Q8IZC4 609 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 IFNL2Q8IZJ0 200 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 SRBD1Q8N5C6 995 aaKnown RBP6.29□□□□□ -1.4
VCAN-203ENST00000343200 ZNF548Q8NEK5 533 aaPredicted RBP6.29□□□□□ -1.4
VCAN-203ENST00000343200 DNAJA4Q8WW22 397 aaPredicted RBP6.29□□□□□ -1.4
VCAN-203ENST00000343200 SUGCTQ9HAC7 445 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 ARHGAP21Q5T5U3 1957 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 AFF2P51816 1311 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 SSU72P8A0A1W2PR75 194 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 OIP5O43482 229 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 CDC42P60953 191 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 TMC7Q7Z402 723 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 PHACTR4Q8IZ21 702 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 SYNPOQ8N3V7 929 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 ZSCAN18Q8TBC5 510 aaPredicted RBP6.29□□□□□ -1.4
VCAN-203ENST00000343200 HELQQ8TDG4 1101 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 CEP170P1Q96L14 293 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 LRMDAQ9H2I8 198 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 RETREG1Q9H6L5 497 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 ZFYVE28Q9HCC9 887 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 MORF4L1Q9UBU8 362 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 AFF4Q9UHB7 1163 aaKnown RBP6.29□□□□□ -1.4
VCAN-203ENST00000343200 CDH7Q9ULB5 785 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 OGDHLQ9ULD0 1010 aa6.29□□□□□ -1.4
VCAN-203ENST00000343200 YTHDC2Q9H6S0 1430 aaKnown RBP6.28□□□□□ -1.4
VCAN-203ENST00000343200 KANTRA0A1W2PQU2 76 aa6.28□□□□□ -1.4
VCAN-203ENST00000343200 PRODHO43272 600 aa6.28□□□□□ -1.4
VCAN-203ENST00000343200 GLRA3O75311 464 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms