RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 ARL5CA6NH57 179 aa10.64□□□□□ -0.71
LIMA1-201ENST00000341247 DGKIO75912 1065 aa10.64□□□□□ -0.71
LIMA1-201ENST00000341247 GNAT1P11488 350 aa10.64□□□□□ -0.71
LIMA1-201ENST00000341247 CD52P31358 61 aa10.64□□□□□ -0.71
LIMA1-201ENST00000341247 THPOP40225 353 aa10.64□□□□□ -0.71
LIMA1-201ENST00000341247 PGGT1BP53609 377 aa10.64□□□□□ -0.71
LIMA1-201ENST00000341247 TIGD5Q53EQ6 642 aa10.64□□□□□ -0.71
LIMA1-201ENST00000341247 PPM1JQ5JR12 505 aa10.64□□□□□ -0.71
LIMA1-201ENST00000341247 DNAAF3Q8N9W5 541 aa10.64□□□□□ -0.71
LIMA1-201ENST00000341247 MCUQ8NE86 351 aa10.64□□□□□ -0.71
LIMA1-201ENST00000341247 AZIN2Q96A70 460 aa10.64□□□□□ -0.71
LIMA1-201ENST00000341247 FAM124BQ9H5Z6 455 aaPredicted RBP10.64□□□□□ -0.71
LIMA1-201ENST00000341247 SSU72Q9NP77 194 aaKnown RBP10.64□□□□□ -0.71
LIMA1-201ENST00000341247 PCDHA11Q9Y5I1 949 aa10.64□□□□□ -0.71
LIMA1-201ENST00000341247 RALGAPA2Q2PPJ7 1873 aa10.64□□□□□ -0.71
LIMA1-201ENST00000341247 EYSQ5T1H1 3165 aa10.64□□□□□ -0.71
LIMA1-201ENST00000341247 STK10O94804 968 aaKnown RBP10.64□□□□□ -0.71
LIMA1-201ENST00000341247 CHRNA1P02708 482 aa10.64□□□□□ -0.71
LIMA1-201ENST00000341247 PRKCHP24723 683 aa10.64□□□□□ -0.71
LIMA1-201ENST00000341247 RGS2P41220 211 aa10.64□□□□□ -0.71
LIMA1-201ENST00000341247 SARNPP82979 210 aaKnown RBP10.64□□□□□ -0.71
LIMA1-201ENST00000341247 PDE1BQ01064 536 aa10.64□□□□□ -0.71
LIMA1-201ENST00000341247 WASHC5Q12768 1159 aa10.64□□□□□ -0.71
LIMA1-201ENST00000341247 SEMA5AQ13591 1074 aa10.64□□□□□ -0.71
LIMA1-201ENST00000341247 RWDD4Q6NW29 188 aaKnown RBP10.64□□□□□ -0.71
LIMA1-201ENST00000341247 NPWQ8N729 165 aa10.64□□□□□ -0.71
LIMA1-201ENST00000341247 OXNAD1Q96HP4 312 aaPredicted RBP10.64□□□□□ -0.71
LIMA1-201ENST00000341247 OLFM3Q96PB7 478 aa10.64□□□□□ -0.71
LIMA1-201ENST00000341247 NCAPGQ9BPX3 1015 aa10.64□□□□□ -0.71
LIMA1-201ENST00000341247 KATNAL1Q9BW62 490 aa10.64□□□□□ -0.71
LIMA1-201ENST00000341247 CYLDQ9NQC7 956 aa10.64□□□□□ -0.71
LIMA1-201ENST00000341247 ARL8BQ9NVJ2 186 aa10.64□□□□□ -0.71
LIMA1-201ENST00000341247 PLLPQ9Y342 182 aa10.64□□□□□ -0.71
LIMA1-201ENST00000341247 RPS6KL1Q9Y6S9 549 aa10.64□□□□□ -0.71
LIMA1-201ENST00000341247 IGHA2P01877 340 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 SAT1P21673 171 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 KCNA4P22459 653 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 ADRA1BP35368 520 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 RPL10AP62906 217 aaKnown RBP10.63□□□□□ -0.71
LIMA1-201ENST00000341247 XKR4Q5GH76 650 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 AGMOQ6ZNB7 445 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 KDELC2Q7Z4H8 507 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 CLNKQ7Z7G1 428 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 TBC1D10AQ9BXI6 508 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 XAB2Q9HCS7 855 aaKnown RBP10.63□□□□□ -0.71
LIMA1-201ENST00000341247 ACSS2Q9NR19 701 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 ZNF358Q9NW07 568 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 SDR42E2A6NKP2 422 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 C2CD2LO14523 706 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 LYPLA1O75608 230 aaPredicted RBP10.63□□□□□ -0.71
LIMA1-201ENST00000341247 CCNB1P14635 433 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 TSHRP16473 764 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 DAOAP59103 153 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 PRKD1Q15139 912 aaPredicted RBP10.63□□□□□ -0.71
LIMA1-201ENST00000341247 SCAMP5Q8TAC9 235 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 E2F7Q96AV8 911 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 C20orf27Q9GZN8 174 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 DNAI2Q9GZS0 605 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 TKTL2Q9H0I9 626 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 TTC3P53804 2025 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 TPP1O14773 563 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 HAUS5O94927 633 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 DHRS4L1P0CG22 281 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 TPSB2P20231 275 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 RCN2Q14257 317 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 PDK1Q15118 436 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 TPSAB1Q15661 275 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 PAXIP1Q6ZW49 1069 aaPredicted RBP10.63□□□□□ -0.71
LIMA1-201ENST00000341247 CMC1Q7Z7K0 106 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 RASSF3Q86WH2 238 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 KIRREL3Q8IZU9 778 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 MYLPFQ96A32 169 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 SLC7A6OSQ96CW6 309 aaPredicted RBP10.63□□□□□ -0.71
LIMA1-201ENST00000341247 KCNK13Q9HB14 408 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 PNPLA8Q9NP80 782 aa10.63□□□□□ -0.71
LIMA1-201ENST00000341247 FAM159BA6NKW6 160 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 TRDMT1O14717 391 aaKnown RBP10.62□□□□□ -0.71
LIMA1-201ENST00000341247 ZBTB24O43167 697 aaPredicted RBP10.62□□□□□ -0.71
LIMA1-201ENST00000341247 LTFP02788 710 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 ITGB1P05556 798 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 OR4Q2P0C623 313 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 AKR1A1P14550 325 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 EZRP15311 586 aaKnown RBP10.62□□□□□ -0.71
LIMA1-201ENST00000341247 MAGEA3P43357 314 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 FKBP1BP68106 108 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 CRYMQ14894 314 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 PCBP1Q15365 356 aaKnown RBP eCLIP10.62□□□□□ -0.71
LIMA1-201ENST00000341247 RASAL3Q86YV0 1011 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 ZNF669Q96BR6 464 aaPredicted RBP10.62□□□□□ -0.71
LIMA1-201ENST00000341247 TMLHEQ9NVH6 421 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 TXNDC16Q9P2K2 825 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 TRPV2Q9Y5S1 764 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 USP34Q70CQ2 3546 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.62□□□□□ -0.71
LIMA1-201ENST00000341247 EIF4E1BA6NMX2 242 aaKnown RBP10.62□□□□□ -0.71
LIMA1-201ENST00000341247 GABRDO14764 452 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 PPP1R12AO14974 1030 aaPredicted RBP10.62□□□□□ -0.71
LIMA1-201ENST00000341247 MGEA5O60502 916 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 LRPAP1P30533 357 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 RPL34P49207 117 aaKnown RBP10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms