RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 NCF1CA8MVU1 366 aaPredicted RBP12.26□□□□□ -0.45
USP1-201ENST00000339950 M0QZ92 97 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 STBD1O95210 358 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 POLBP06746 335 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 NCF1P14598 390 aaPredicted RBP12.26□□□□□ -0.45
USP1-201ENST00000339950 NOMO1Q15155 1222 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 FAM219BQ5XKK7 198 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 PPP1R2P3Q6NXS1 205 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 HFE2Q6ZVN8 426 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 ADGRF2Q8IZF7 708 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 DNERQ8NFT8 737 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 SLC44A1Q8WWI5 657 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 P2RY11Q96G91 374 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 TRPV6Q9H1D0 765 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 CHRAC1Q9NRG0 131 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 GPRC5DQ9NZD1 345 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 TMEM216Q9P0N5 145 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 LGALS13Q9UHV8 139 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 STAP1Q9ULZ2 295 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 LZTS1Q9Y250 596 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 MYOCOSA0A1B0GUC4 107 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 T-ENOLP0DO92 83 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 MAPK10P53779 464 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 CCNA1P78396 465 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 MRPS35P82673 323 aaKnown RBP12.25□□□□□ -0.45
USP1-201ENST00000339950 SYPL2Q5VXT5 272 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 PDPK2PQ6A1A2 396 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 ADGRD1Q6QNK2 874 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 C15orf39Q6ZRI6 1047 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 TRIM67Q6ZTA4 783 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.25□□□□□ -0.45
USP1-201ENST00000339950 NUP93Q8N1F7 819 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 CENPKQ9BS16 269 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 TMEM134Q9H6X4 195 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 SLC5A4Q9NY91 659 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 BTAF1O14981 1849 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 TM9SF1O15321 606 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 PLA2G6O60733 806 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 TUBP50607 506 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 IL1RL1Q01638 556 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 SLC34A1Q06495 639 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 CSHL1Q14406 222 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 NRF1Q16656 503 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 GALNTL6Q49A17 601 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 ZNF280DQ6N043 979 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 OTOP3Q7RTS5 596 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 SNX32Q86XE0 403 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 HIC2Q96JB3 615 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 LRMDAQ9H2I8 198 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 PDZD7Q9H5P4 517 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 SMNDC1O75940 238 aaKnown RBP eCLIP12.25□□□□□ -0.45
USP1-201ENST00000339950 IRF9Q00978 393 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 MBTD1Q05BQ5 628 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 SPDYAQ5MJ70 313 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 RNF139Q8WU17 664 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 DNAI2Q9GZS0 605 aa12.25□□□□□ -0.45
USP1-201ENST00000339950 NEMP2A6NFY4 417 aa12.24□□□□□ -0.45
USP1-201ENST00000339950 C2CD4BA6NLJ0 364 aa12.24□□□□□ -0.45
USP1-201ENST00000339950 KPNA7A9QM74 516 aa12.24□□□□□ -0.45
USP1-201ENST00000339950 KIF3CO14782 793 aa12.24□□□□□ -0.45
USP1-201ENST00000339950 IGFBP6P24592 240 aaPredicted RBP12.24□□□□□ -0.45
USP1-201ENST00000339950 MAGEC3Q8TD91 643 aa12.24□□□□□ -0.45
USP1-201ENST00000339950 NAT14Q8WUY8 206 aa12.24□□□□□ -0.45
USP1-201ENST00000339950 ZMAT2Q96NC0 199 aaKnown RBP12.24□□□□□ -0.45
USP1-201ENST00000339950 CSPG4P5Q96PW8 444 aa12.24□□□□□ -0.45
USP1-201ENST00000339950 PHACTR1Q9C0D0 580 aa12.24□□□□□ -0.45
USP1-201ENST00000339950 DDX18Q9NVP1 670 aaKnown RBP12.24□□□□□ -0.45
USP1-201ENST00000339950 MAP3K20Q9NYL2 800 aaKnown RBP12.24□□□□□ -0.45
USP1-201ENST00000339950 SLX4Q8IY92 1834 aa12.24□□□□□ -0.45
USP1-201ENST00000339950 COL16A1Q07092 1604 aaPredicted RBP12.24□□□□□ -0.45
USP1-201ENST00000339950 TYROBPO43914 113 aa12.24□□□□□ -0.45
USP1-201ENST00000339950 MT-CYBP00156 380 aaPredicted RBP12.24□□□□□ -0.45
USP1-201ENST00000339950 ABHD2P08910 425 aa12.24□□□□□ -0.45
USP1-201ENST00000339950 BDNFP23560 247 aa12.24□□□□□ -0.45
USP1-201ENST00000339950 ABCD1P33897 745 aa12.24□□□□□ -0.45
USP1-201ENST00000339950 TBL3Q12788 808 aaKnown RBP12.24□□□□□ -0.45
USP1-201ENST00000339950 SLC10A2Q12908 348 aaPredicted RBP12.24□□□□□ -0.45
USP1-201ENST00000339950 NOMO2Q5JPE7 1267 aa12.24□□□□□ -0.45
USP1-201ENST00000339950 ULK2Q8IYT8 1036 aa12.24□□□□□ -0.45
USP1-201ENST00000339950 DCBLD1Q8N8Z6 715 aa12.24□□□□□ -0.45
USP1-201ENST00000339950 KCTD15Q96SI1 283 aaPredicted RBP12.24□□□□□ -0.45
USP1-201ENST00000339950 CDRT15Q96T59 188 aa12.24□□□□□ -0.45
USP1-201ENST00000339950 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.24□□□□□ -0.45
USP1-201ENST00000339950 DDX43Q9NXZ2 648 aaKnown RBP12.24□□□□□ -0.45
USP1-201ENST00000339950 MYH9P35579 1960 aaKnown RBP12.24□□□□□ -0.45
USP1-201ENST00000339950 STX16-NPEPL1H3BU86 382 aa12.24□□□□□ -0.45
USP1-201ENST00000339950 TK2O00142 265 aa12.24□□□□□ -0.45
USP1-201ENST00000339950 ONECUT3O60422 494 aaPredicted RBP12.24□□□□□ -0.45
USP1-201ENST00000339950 RAG1P15918 1043 aa12.24□□□□□ -0.45
USP1-201ENST00000339950 ERCC2P18074 760 aa12.24□□□□□ -0.45
USP1-201ENST00000339950 CSE1LP55060 971 aaKnown RBP12.24□□□□□ -0.45
USP1-201ENST00000339950 HDAC4P56524 1084 aa12.24□□□□□ -0.45
USP1-201ENST00000339950 ACAP1Q15027 740 aa12.24□□□□□ -0.45
USP1-201ENST00000339950 LRRC38Q5VT99 294 aa12.24□□□□□ -0.45
USP1-201ENST00000339950 TRNP1Q6NT89 227 aa12.24□□□□□ -0.45
USP1-201ENST00000339950 ANKRD13AQ8IZ07 590 aa12.24□□□□□ -0.45
USP1-201ENST00000339950 GPRC5AQ8NFJ5 357 aa12.24□□□□□ -0.45
USP1-201ENST00000339950 EBNA1BP2Q99848 306 aaKnown RBP12.24□□□□□ -0.45
USP1-201ENST00000339950 AP5M1Q9H0R1 490 aa12.24□□□□□ -0.45
USP1-201ENST00000339950 WDCPQ9H6R7 721 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms