RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 FERMT1Q9BQL6 677 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 CLSTN3Q9BQT9 956 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 TMEM109Q9BVC6 243 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 ETNK1Q9HBU6 452 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.8□□□□□ -0.24e-6■□□□□ 9.4
HMGB1-202ENST00000339872 CLIC5Q9NZA1 410 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 TLR6Q9Y2C9 796 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 SHROOM3Q8TF72 1996 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 ZBBXA8MT70 800 aa13.79□□□□□ -0.2
HMGB1-202ENST00000339872 RNF103O00237 685 aa13.79□□□□□ -0.2
HMGB1-202ENST00000339872 STK10O94804 968 aaKnown RBP13.79□□□□□ -0.2
HMGB1-202ENST00000339872 METTL18O95568 372 aa13.79□□□□□ -0.2
HMGB1-202ENST00000339872 TBX18O95935 607 aa13.79□□□□□ -0.2
HMGB1-202ENST00000339872 APRTP07741 180 aa13.79□□□□□ -0.2
HMGB1-202ENST00000339872 HSPA1AP0DMV8 641 aaKnown RBP13.79□□□□□ -0.2
HMGB1-202ENST00000339872 HSPA1BP0DMV9 641 aaKnown RBP13.79□□□□□ -0.2
HMGB1-202ENST00000339872 TBX4P57082 545 aa13.79□□□□□ -0.2
HMGB1-202ENST00000339872 DSG1Q02413 1049 aa13.79□□□□□ -0.2
HMGB1-202ENST00000339872 C10orf120Q5SQS8 335 aa13.79□□□□□ -0.2
HMGB1-202ENST00000339872 PKNOX2Q96KN3 472 aa13.79□□□□□ -0.2
HMGB1-202ENST00000339872 FCRL2Q96LA5 508 aaPredicted RBP13.79□□□□□ -0.2
HMGB1-202ENST00000339872 HERC2P3Q9BVR0 1158 aa13.79□□□□□ -0.2
HMGB1-202ENST00000339872 PHACTR1Q9C0D0 580 aa13.79□□□□□ -0.2
HMGB1-202ENST00000339872 IL23AQ9NPF7 189 aa13.79□□□□□ -0.2
HMGB1-202ENST00000339872 OLA1Q9NTK5 396 aaKnown RBP13.79□□□□□ -0.2
HMGB1-202ENST00000339872 COMMD8Q9NX08 183 aa13.79□□□□□ -0.2
HMGB1-202ENST00000339872 SPG21Q9NZD8 308 aa13.79□□□□□ -0.2
HMGB1-202ENST00000339872 RAD54BQ9Y620 910 aa13.79□□□□□ -0.2
HMGB1-202ENST00000339872 A0A0A0MRY4 1105 aa13.79□□□□□ -0.2
HMGB1-202ENST00000339872 KCNU1A8MYU2 1149 aa13.79□□□□□ -0.2
HMGB1-202ENST00000339872 ALOX15BO15296 676 aa13.79□□□□□ -0.2
HMGB1-202ENST00000339872 RGS16O15492 202 aaPredicted RBP13.79□□□□□ -0.2
HMGB1-202ENST00000339872 TUFMP49411 452 aaKnown RBP13.79□□□□□ -0.2
HMGB1-202ENST00000339872 ATP1A2P50993 1020 aa13.79□□□□□ -0.2
HMGB1-202ENST00000339872 BBS9Q3SYG4 887 aa13.79□□□□□ -0.2
HMGB1-202ENST00000339872 ANKRD20A2Q5SQ80 823 aa13.79□□□□□ -0.2
HMGB1-202ENST00000339872 C6orf118Q5T5N4 469 aa13.79□□□□□ -0.2
HMGB1-202ENST00000339872 ANKRD20A1Q5TYW2 823 aa13.79□□□□□ -0.2
HMGB1-202ENST00000339872 ANKRD20A3Q5VUR7 823 aa13.79□□□□□ -0.2
HMGB1-202ENST00000339872 PPP1R21Q6ZMI0 780 aa13.79□□□□□ -0.2
HMGB1-202ENST00000339872 MIB1Q86YT6 1006 aa13.79□□□□□ -0.2
HMGB1-202ENST00000339872 SPATA13Q96N96 652 aa13.79□□□□□ -0.2
HMGB1-202ENST00000339872 CEP41Q9BYV8 373 aa13.79□□□□□ -0.2
HMGB1-202ENST00000339872 ROPN1BQ9BZX4 212 aaPredicted RBP13.79□□□□□ -0.2
HMGB1-202ENST00000339872 VPS37BQ9H9H4 285 aa13.79□□□□□ -0.2
HMGB1-202ENST00000339872 ROPN1Q9HAT0 212 aaPredicted RBP13.79□□□□□ -0.2
HMGB1-202ENST00000339872 AFF4Q9UHB7 1163 aaKnown RBP13.79□□□□□ -0.2
HMGB1-202ENST00000339872 NEU3Q9UQ49 428 aa13.79□□□□□ -0.2
HMGB1-202ENST00000339872 E7ESA3 106 aa13.78□□□□□ -0.2
HMGB1-202ENST00000339872 F5H423 210 aaPredicted RBP13.78□□□□□ -0.2
HMGB1-202ENST00000339872 EIF3HO15372 352 aaKnown RBP eCLIP13.78□□□□□ -0.2
HMGB1-202ENST00000339872 URODP06132 367 aa13.78□□□□□ -0.2
HMGB1-202ENST00000339872 ABHD2P08910 425 aa13.78□□□□□ -0.2
HMGB1-202ENST00000339872 SLC2A3P11169 496 aa13.78□□□□□ -0.2
HMGB1-202ENST00000339872 DNAJB2P25686 324 aa13.78□□□□□ -0.2
HMGB1-202ENST00000339872 LMAN1P49257 510 aa13.78□□□□□ -0.2
HMGB1-202ENST00000339872 MAGOHP61326 146 aaKnown RBP13.78□□□□□ -0.2
HMGB1-202ENST00000339872 PYROXD1Q8WU10 500 aa13.78□□□□□ -0.2
HMGB1-202ENST00000339872 TBC1D31Q96DN5 1066 aa13.78□□□□□ -0.2
HMGB1-202ENST00000339872 PGM2Q96G03 612 aa13.78□□□□□ -0.2
HMGB1-202ENST00000339872 SLC39A13Q96H72 371 aa13.78□□□□□ -0.2
HMGB1-202ENST00000339872 MARCH2Q9P0N8 246 aa13.78□□□□□ -0.2
HMGB1-202ENST00000339872 NUP205Q92621 2012 aa13.78□□□□□ -0.2
HMGB1-202ENST00000339872 A0A087WUV0 522 aaPredicted RBP13.78□□□□□ -0.2
HMGB1-202ENST00000339872 E7EVH7 732 aa13.78□□□□□ -0.2
HMGB1-202ENST00000339872 NCAM2O15394 837 aa13.78□□□□□ -0.2
HMGB1-202ENST00000339872 SEC24AO95486 1093 aa13.78□□□□□ -0.2
HMGB1-202ENST00000339872 APOEP02649 317 aa13.78□□□□□ -0.2
HMGB1-202ENST00000339872 MANEALQ5VSG8 457 aa13.78□□□□□ -0.2
HMGB1-202ENST00000339872 KDM7AQ6ZMT4 941 aa13.78□□□□□ -0.2
HMGB1-202ENST00000339872 FBXO36Q8NEA4 188 aa13.78□□□□□ -0.2
HMGB1-202ENST00000339872 ZNF461Q8TAF7 563 aa13.78□□□□□ -0.2
HMGB1-202ENST00000339872 DEPDC1BQ8WUY9 529 aa13.78□□□□□ -0.2
HMGB1-202ENST00000339872 AUTS2Q8WXX7 1259 aa13.78□□□□□ -0.2
HMGB1-202ENST00000339872 TLCD1Q96CP7 247 aa13.78□□□□□ -0.2
HMGB1-202ENST00000339872 CELF6Q96J87 481 aaKnown RBP13.78□□□□□ -0.2
HMGB1-202ENST00000339872 CCSER2Q9H7U1 834 aa13.78□□□□□ -0.2
HMGB1-202ENST00000339872 CYP4F11Q9HBI6 524 aa13.78□□□□□ -0.2
HMGB1-202ENST00000339872 HS3ST4Q9Y661 456 aa13.78□□□□□ -0.2
HMGB1-202ENST00000339872 MYO18AQ92614 2054 aaKnown RBP13.78□□□□□ -0.2
HMGB1-202ENST00000339872 ALPK3Q96L96 1907 aa13.77□□□□□ -0.2
HMGB1-202ENST00000339872 E9PAM4 449 aa13.77□□□□□ -0.21
HMGB1-202ENST00000339872 KCNK1O00180 336 aa13.77□□□□□ -0.21
HMGB1-202ENST00000339872 OPHN1O60890 802 aa13.77□□□□□ -0.21
HMGB1-202ENST00000339872 IVLP07476 585 aa13.77□□□□□ -0.21
HMGB1-202ENST00000339872 HMBSP08397 361 aa13.77□□□□□ -0.21
HMGB1-202ENST00000339872 MX2P20592 715 aa13.77□□□□□ -0.21
HMGB1-202ENST00000339872 HTR7P34969 479 aa13.77□□□□□ -0.21
HMGB1-202ENST00000339872 MAGEA6P43360 314 aa13.77□□□□□ -0.21
HMGB1-202ENST00000339872 PPIDQ08752 370 aaKnown RBP13.77□□□□□ -0.21
HMGB1-202ENST00000339872 AUHQ13825 339 aaKnown RBP13.77□□□□□ -0.21
HMGB1-202ENST00000339872 TRIP4Q15650 581 aaPredicted RBP13.77□□□□□ -0.21
HMGB1-202ENST00000339872 PIK3R6Q5UE93 754 aa13.77□□□□□ -0.21
HMGB1-202ENST00000339872 DDX53Q86TM3 631 aaKnown RBP13.77□□□□□ -0.21
HMGB1-202ENST00000339872 SERPINB12Q96P63 405 aa13.77□□□□□ -0.21
HMGB1-202ENST00000339872 CCDC77Q9BR77 488 aa13.77□□□□□ -0.21
HMGB1-202ENST00000339872 WDR83Q9BRX9 315 aaKnown RBP13.77□□□□□ -0.21
HMGB1-202ENST00000339872 TTLL2Q9BWV7 592 aa13.77□□□□□ -0.21
HMGB1-202ENST00000339872 CATSPERBQ9H7T0 1116 aa13.77□□□□□ -0.21
HMGB1-202ENST00000339872 TMEM51Q9NW97 253 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms