RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 FBXW8Q8N3Y1 598 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 PIK3C3Q8NEB9 887 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 DDX54Q8TDD1 881 aaKnown RBP4.25□□□□□ -1.73
NEDD4-201ENST00000338963 PPWD1Q96BP3 646 aaKnown RBP4.25□□□□□ -1.73
NEDD4-201ENST00000338963 MTMR8Q96EF0 704 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 TRIM51Q9BSJ1 452 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 PCDHB16Q9NRJ7 776 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 ARHGAP20Q9P2F6 1191 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 DBR1Q9UK59 544 aaKnown RBP4.25□□□□□ -1.73
NEDD4-201ENST00000338963 RAB23Q9ULC3 237 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 NEURL4Q96JN8 1562 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 LRRC7Q96NW7 1537 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 RCCD1A6NED2 376 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 GRXCR2A6NFK2 248 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 PLK4O00444 970 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 ZBTB43O43298 467 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 SPOPO43791 374 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 GARTP22102 1010 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 TEFQ10587 303 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 NCOA4Q13772 614 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 COTL1Q14019 142 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 DMC1Q14565 340 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 LONRF1Q17RB8 773 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 FAM47AQ5JRC9 791 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 CREB3L2Q70SY1 520 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 OTOAQ7RTW8 1153 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 TRABD2AQ86V40 505 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 PPP4R1Q8TF05 950 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 PSPC1Q8WXF1 523 aaKnown RBP4.25□□□□□ -1.73
NEDD4-201ENST00000338963 RFFLQ8WZ73 363 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 PHKBQ93100 1093 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 PHF21AQ96BD5 680 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 SLC29A1Q99808 456 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 CCDC8Q9H0W5 538 aaPredicted RBP4.25□□□□□ -1.73
NEDD4-201ENST00000338963 RPF2Q9H7B2 306 aaKnown RBP4.25□□□□□ -1.73
NEDD4-201ENST00000338963 TIGARQ9NQ88 270 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 PCDHGC3Q9UN70 934 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 SLC45A1Q9Y2W3 748 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 PRKAB1Q9Y478 270 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 CROCC2H7BZ55 1655 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 PBRM1Q86U86 1689 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 METP08581 1390 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 ZNF487B1APH4 448 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 H3BM21 787 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 KLHL18O94889 574 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 SOX30O94993 753 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 NPPAP01160 153 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 IFNA4P05014 189 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 NR3C2P08235 984 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 EEF1B2P24534 225 aaKnown RBP4.25□□□□□ -1.73
NEDD4-201ENST00000338963 NME5P56597 212 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 MGAT5Q09328 741 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 TLR1Q15399 786 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 PKN2Q16513 984 aaKnown RBP4.25□□□□□ -1.73
NEDD4-201ENST00000338963 ZNF425Q6IV72 752 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 IGFN1Q86VF2 1251 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 OR10T2Q8NGX3 314 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 OR8K3Q8NH51 312 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 TMCO6Q96DC7 493 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 C8orf37Q96NL8 207 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 GRWD1Q9BQ67 446 aaKnown RBP eCLIP4.25□□□□□ -1.732e-6■■□□□ 14.1
NEDD4-201ENST00000338963 GTPBP2Q9BX10 602 aaKnown RBP4.25□□□□□ -1.73
NEDD4-201ENST00000338963 SLC12A5Q9H2X9 1139 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 CDC42EP4Q9H3Q1 356 aaKnown RBP4.25□□□□□ -1.73
NEDD4-201ENST00000338963 SIAEQ9HAT2 523 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 WDR6Q9NNW5 1121 aaKnown RBP4.25□□□□□ -1.73
NEDD4-201ENST00000338963 NPHS2Q9NP85 383 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 SMARCAL1Q9NZC9 954 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 MID2Q9UJV3 735 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 VPS28Q9UK41 221 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 POU2F3Q9UKI9 436 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 CLEC4AQ9UMR7 237 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 BAIAP2Q9UQB8 552 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 MED16Q9Y2X0 877 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 DERAQ9Y315 318 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 SNX13Q9Y5W8 968 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 CDY2AQ9Y6F7 541 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 MAU2Q9Y6X3 613 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 EYA2O00167 538 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 TLL1O43897 1013 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 MMP1P03956 469 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 PDGFAP04085 211 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 C6orf222P0C671 652 aaPredicted RBP4.25□□□□□ -1.73
NEDD4-201ENST00000338963 PTPN1P18031 435 aaKnown RBP4.25□□□□□ -1.73
NEDD4-201ENST00000338963 AMPD1P23109 780 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 PCSK6P29122 969 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 CASP3P42574 277 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 FUT11Q495W5 492 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 ZNF530Q6P9A1 599 aaPredicted RBP4.25□□□□□ -1.73
NEDD4-201ENST00000338963 ZYG11AQ6WRX3 759 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 CATSPER3Q86XQ3 398 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 RIOX2Q8IUF8 465 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 WDR49Q8IV35 697 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 OR7G3Q8NG95 312 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 OR5H6Q8NGV6 325 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 SETD6Q8TBK2 473 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 FBXO25Q8TCJ0 367 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 UFD1Q92890 307 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 MTERF3Q96E29 417 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 ZKSCAN3Q9BRR0 538 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 84.4 ms