RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 HTR7P34969 479 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 TWF1Q12792 350 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 LINC00116Q8NCU8 138 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 PNMA5Q96PV4 448 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 RAB26Q9ULW5 256 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 DMTF1Q9Y222 760 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 GSTT1P30711 240 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 TCF7P36402 384 aaPredicted RBP10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 RGS7P49802 495 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 TSEN2Q8NCE0 465 aaKnown RBP10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 NFASCO94856 1347 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 BMP10O95393 424 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 RARRES1P49788 294 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 FASTKQ14296 549 aaKnown RBP10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 TMEM139Q8IV31 216 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 SLC39A8Q9C0K1 460 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 FAM49BQ9NUQ9 324 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 hCG_2014768A0A024R1R8 64 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 M0QYT0 321 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 ZBTB22O15209 634 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 SUPT7LO94864 414 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 ZCCHC18P0CG32 403 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 RPL3P39023 403 aaKnown RBP10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 ATAD3BQ5T9A4 648 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 TDRD10Q5VZ19 366 aaKnown RBP10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 ABRAXAS1Q6UWZ7 409 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 ZDHHC13Q8IUH4 622 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 TMEM86AQ8N2M4 240 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 TMEM132CQ8N3T6 1108 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 MPP4Q96JB8 637 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 OSBPL6Q9BZF3 934 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 CROCCQ5TZA2 2017 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 SAGE2PA6NJ88 616 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 LIASO43766 372 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 PDGFRBP09619 1106 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 THEMIS2Q5TEJ8 643 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 METTL3Q86U44 580 aaKnown RBP10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 PDPRQ8NCN5 879 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 SHC3Q92529 594 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 SMARCD1Q96GM5 515 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 NSMCE2Q96MF7 247 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 A0A0G2JLW4 131 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 MTA2O94776 668 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 BMP6P22004 513 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 CES1P23141 567 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 KIZQ2M2Z5 673 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 OR56A4Q8NGH8 313 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 MYOZ2Q9NPC6 264 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 TRPM5Q9NZQ8 1165 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 SLITRK3O94933 977 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 CSE1LP55060 971 aaKnown RBP10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 DLG4P78352 724 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 BFSP2Q13515 415 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 NFYCQ13952 458 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 PGM5Q15124 567 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 TBCELQ5QJ74 424 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 GJD4Q96KN9 370 aaPredicted RBP10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 RBM47A0AV96 593 aaKnown RBP10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 PPP2R1BP30154 601 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 MAPK9P45984 424 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 CPA2P48052 419 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 IFI35P80217 286 aaPredicted RBP10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 TTC23Q5W5X9 447 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 BBS12Q6ZW61 710 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 PSTKQ8IV42 348 aaKnown RBP10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 PPP1R36Q96LQ0 422 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 RTKNQ9BST9 563 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 ARMC7Q9H6L4 198 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 DDX60Q8IY21 1712 aaKnown RBP10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 FAM196BA6NMK8 535 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 IFRD1O00458 451 aaPredicted RBP10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 GCLCP48506 637 aaPredicted RBP10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 C21orf59P57076 290 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 BNC1Q01954 994 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 ELAVL2Q12926 359 aaKnown RBP10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 PPIL2Q13356 520 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 DPYSL3Q14195 570 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 METTL21CQ5VZV1 264 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 LEMD2Q8NC56 503 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 HELQQ8TDG4 1101 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 TAS2R13Q9NYV9 303 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 ACKR2O00590 384 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 LYPLA2O95372 231 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 STAG3L1P0CL83 205 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 MLNP12872 115 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 IFNGR2P38484 337 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 ARPP19P56211 112 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 RPL10AP62906 217 aaKnown RBP10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 NUDT12Q9BQG2 462 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 INPP5FQ9Y2H2 1132 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 PLIN4Q96Q06 1357 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 A0A087X0B3 334 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 CENPXA8MT69 81 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 E9PBE3 544 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 GRAP2O75791 330 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 TCN1P20061 433 aaPredicted RBP10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 ITGALP20701 1170 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 RGS21Q2M5E4 152 aa10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 PNPT1Q8TCS8 783 aaKnown RBP10.51□□□□□ -0.73
CCDC88A-202ENST00000336838 AHSPQ9NZD4 102 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms