RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 BGNP21810 368 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 SMIM11AP58511 58 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 NR6A1Q15406 480 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 HKDC1Q2TB90 917 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 KDELC2Q7Z4H8 507 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 TC2NQ8N9U0 490 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 CHP1Q99653 195 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 PCDH12Q9NPG4 1184 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 CKLFQ9UBR5 152 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 CCDC88AQ3V6T2 1871 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 NOL4O94818 638 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 RBBP4Q09028 425 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 CBX3Q13185 183 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 RIPK1Q13546 671 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 MPP2Q14168 576 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 TAF13Q15543 124 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 BOLA3Q53S33 107 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 ANKRD26P1Q6NSI1 321 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 SMIM5Q71RC9 77 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 FBXO36Q8NEA4 188 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 NACC2Q96BF6 587 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 SLC6A15Q9H2J7 730 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 SLC38A7Q9NVC3 462 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 PNMA8BQ9ULN7 279 aaPredicted RBP6.31□□□□□ -1.4
CSMD1-201ENST00000335551 MAGEB2O15479 319 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 PLEKHA8P1O95397 391 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 ADAM17P78536 824 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 CDC42EP1Q00587 391 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 SMTNL2Q2TAL5 461 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 PLA2G4FQ68DD2 849 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 TMEM179Q6ZVK1 233 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 SLCO6A1Q86UG4 719 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 FBXW8Q8N3Y1 598 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 B3GALNT2Q8NCR0 500 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 SLC30A5Q8TAD4 765 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 KCTD10Q9H3F6 313 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 JPH1Q9HDC5 661 aaPredicted RBP6.31□□□□□ -1.4
CSMD1-201ENST00000335551 POLIQ9UNA4 740 aa6.31□□□□□ -1.4
CSMD1-201ENST00000335551 PGRMC2O15173 223 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 ATP6V1G1O75348 118 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 RLN1P04808 185 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 ETS1P14921 441 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 ZNF37AP17032 561 aaPredicted RBP6.3□□□□□ -1.4
CSMD1-201ENST00000335551 CHRM3P20309 590 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 AVPR1AP37288 418 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 ACOT12Q8WYK0 555 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 LY9Q9HBG7 655 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 CLIC5Q9NZA1 410 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 TMEM216Q9P0N5 145 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 GPN3Q9UHW5 284 aaPredicted RBP6.3□□□□□ -1.4
CSMD1-201ENST00000335551 G3V2T6 193 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 SMIM22K7EJ46 135 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 FOXN3O00409 490 aaPredicted RBP6.3□□□□□ -1.4
CSMD1-201ENST00000335551 ORC5O43913 435 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 CPA3P15088 417 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 EPB42P16452 691 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 SUPT20HL1Q3ZLR7 823 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 CAMKK1Q8N5S9 505 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 ZNF304Q9HCX3 659 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 MORF4L1Q9UBU8 362 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 SSR3Q9UNL2 185 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 TBC1D30Q9Y2I9 924 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 ASB14A6NK59 587 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 CST8O60676 142 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 HOXD10P28358 340 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 CDK16Q00536 496 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 OR8H3Q8N146 312 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 SNIP1Q8TAD8 396 aaKnown RBP6.3□□□□□ -1.4
CSMD1-201ENST00000335551 TDRD1Q9BXT4 1180 aaKnown RBP6.3□□□□□ -1.4
CSMD1-201ENST00000335551 SEMA6AQ9H2E6 1030 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 TMEM8AQ9HCN3 771 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 INTS10Q9NVR2 710 aaKnown RBP6.3□□□□□ -1.4
CSMD1-201ENST00000335551 RGSL1A5PLK6 1076 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 MOCS2O96007 188 aaPredicted RBP6.3□□□□□ -1.4
CSMD1-201ENST00000335551 RB1P06400 928 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 RBP3P10745 1247 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 GPD1P21695 349 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 SLC44A2Q8IWA5 706 aaPredicted RBP6.3□□□□□ -1.4
CSMD1-201ENST00000335551 AKAP1Q92667 903 aaKnown RBP eCLIP6.3□□□□□ -1.4
CSMD1-201ENST00000335551 AIFM3Q96NN9 605 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 FAM49BQ9NUQ9 324 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 CASP1P29466 404 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 DSG3P32926 999 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 AP1S1P61966 158 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 CAMK1Q14012 370 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 C15orf59Q2T9L4 293 aaPredicted RBP6.3□□□□□ -1.4
CSMD1-201ENST00000335551 COLGALT2Q8IYK4 626 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 IRX2Q9BZI1 471 aaPredicted RBP6.3□□□□□ -1.4
CSMD1-201ENST00000335551 TRIM2Q9C040 744 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 STN1Q9H668 368 aaKnown RBP6.3□□□□□ -1.4
CSMD1-201ENST00000335551 MED11Q9P086 117 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 TRPC4Q9UBN4 977 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 GEMP55040 296 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 RBP5P82980 135 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 SQLEQ14534 574 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 NECTIN1Q15223 517 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 DDX53Q86TM3 631 aaKnown RBP6.3□□□□□ -1.4
CSMD1-201ENST00000335551 MCFD2Q8NI22 146 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 ITFG2Q969R8 447 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 CLPBQ9H078 707 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms