RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 EPHB2P29323 1055 aa15.39■□□□□ 0.05
CCDC88C-202ENST00000334448 CLCN6P51797 869 aa15.39■□□□□ 0.05
CCDC88C-202ENST00000334448 SLC7A9P82251 487 aa15.39■□□□□ 0.05
CCDC88C-202ENST00000334448 SMAD3P84022 425 aaKnown RBP15.39■□□□□ 0.05
CCDC88C-202ENST00000334448 ZNF33AQ06730 810 aa15.39■□□□□ 0.05
CCDC88C-202ENST00000334448 SLC10A2Q12908 348 aaPredicted RBP15.39■□□□□ 0.05
CCDC88C-202ENST00000334448 KCNC3Q14003 757 aa15.39■□□□□ 0.05
CCDC88C-202ENST00000334448 PDK1Q15118 436 aa15.39■□□□□ 0.05
CCDC88C-202ENST00000334448 PPP1R7Q15435 360 aa15.39■□□□□ 0.05
CCDC88C-202ENST00000334448 DUSP6Q16828 381 aa15.39■□□□□ 0.05
CCDC88C-202ENST00000334448 SLC45A4Q5BKX6 768 aa15.39■□□□□ 0.05
CCDC88C-202ENST00000334448 MS4A13Q5J8X5 152 aa15.39■□□□□ 0.05
CCDC88C-202ENST00000334448 EMBQ6PCB8 327 aa15.39■□□□□ 0.05
CCDC88C-202ENST00000334448 TMCO3Q6UWJ1 677 aa15.39■□□□□ 0.05
CCDC88C-202ENST00000334448 NPNTQ6UXI9 565 aa15.39■□□□□ 0.05
CCDC88C-202ENST00000334448 TDHQ8IZJ6 230 aa15.39■□□□□ 0.05
CCDC88C-202ENST00000334448 LZTR1Q8N653 840 aa15.39■□□□□ 0.05
CCDC88C-202ENST00000334448 MRPS31Q92665 395 aaKnown RBP15.39■□□□□ 0.05
CCDC88C-202ENST00000334448 ZFRQ96KR1 1074 aaKnown RBP15.39■□□□□ 0.05
CCDC88C-202ENST00000334448 CCDC114Q96M63 670 aa15.39■□□□□ 0.05
CCDC88C-202ENST00000334448 KLC2Q9H0B6 622 aa15.39■□□□□ 0.05
CCDC88C-202ENST00000334448 CATSPERBQ9H7T0 1116 aa15.39■□□□□ 0.05
CCDC88C-202ENST00000334448 GRHL1Q9NZI5 618 aa15.39■□□□□ 0.05
CCDC88C-202ENST00000334448 XPO7Q9UIA9 1087 aaKnown RBP15.39■□□□□ 0.05
CCDC88C-202ENST00000334448 ZMYM5Q9UJ78 669 aa15.39■□□□□ 0.05
CCDC88C-202ENST00000334448 GBF1Q92538 1859 aa15.39■□□□□ 0.05
CCDC88C-202ENST00000334448 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP15.38■□□□□ 0.05
CCDC88C-202ENST00000334448 ESYT3A0FGR9 886 aa15.38■□□□□ 0.05
CCDC88C-202ENST00000334448 C2orf78A6NCI8 922 aa15.38■□□□□ 0.05
CCDC88C-202ENST00000334448 DRGXA6NNA5 263 aa15.38■□□□□ 0.05
CCDC88C-202ENST00000334448 E9PAM4 449 aa15.38■□□□□ 0.05
CCDC88C-202ENST00000334448 XYLBO75191 536 aa15.38■□□□□ 0.05
CCDC88C-202ENST00000334448 MYBL2P10244 700 aa15.38■□□□□ 0.05
CCDC88C-202ENST00000334448 EPCAMP16422 314 aa15.38■□□□□ 0.05
CCDC88C-202ENST00000334448 RHOQP17081 205 aa15.38■□□□□ 0.05
CCDC88C-202ENST00000334448 MX2P20592 715 aa15.38■□□□□ 0.05
CCDC88C-202ENST00000334448 GABRR2P28476 465 aa15.38■□□□□ 0.05
CCDC88C-202ENST00000334448 CARSP49589 748 aaKnown RBP15.38■□□□□ 0.05
CCDC88C-202ENST00000334448 GALNT2Q10471 571 aa15.38■□□□□ 0.05
CCDC88C-202ENST00000334448 AUHQ13825 339 aaKnown RBP15.38■□□□□ 0.05
CCDC88C-202ENST00000334448 PRKD1Q15139 912 aaPredicted RBP15.38■□□□□ 0.05
CCDC88C-202ENST00000334448 BEND6Q5SZJ8 279 aaPredicted RBP15.38■□□□□ 0.05
CCDC88C-202ENST00000334448 AFMIDQ63HM1 303 aa15.38■□□□□ 0.05
CCDC88C-202ENST00000334448 NLRP14Q86W24 1093 aa15.38■□□□□ 0.05
CCDC88C-202ENST00000334448 RTL3Q8N8U3 475 aaKnown RBP15.38■□□□□ 0.05
CCDC88C-202ENST00000334448 BBOF1Q8ND07 529 aa15.38■□□□□ 0.05
CCDC88C-202ENST00000334448 CAVIN3Q969G5 261 aa15.38■□□□□ 0.05
CCDC88C-202ENST00000334448 GCNAQ96QF7 691 aa15.38■□□□□ 0.05
CCDC88C-202ENST00000334448 FAM118BQ9BPY3 351 aa15.38■□□□□ 0.05
CCDC88C-202ENST00000334448 RNF38Q9H0F5 515 aa15.38■□□□□ 0.05
CCDC88C-202ENST00000334448 SLC28A3Q9HAS3 691 aa15.38■□□□□ 0.05
CCDC88C-202ENST00000334448 USP29Q9HBJ7 922 aa15.38■□□□□ 0.05
CCDC88C-202ENST00000334448 ZDHHC18Q9NUE0 388 aa15.38■□□□□ 0.05
CCDC88C-202ENST00000334448 SNX10Q9Y5X0 201 aa15.38■□□□□ 0.05
CCDC88C-202ENST00000334448 HCFC2Q9Y5Z7 792 aa15.38■□□□□ 0.05
CCDC88C-202ENST00000334448 LAMA2P24043 3122 aaKnown RBP15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 GFRA2O00451 464 aa15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 PPP1R12AO14974 1030 aaPredicted RBP15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 TP73O15350 636 aa15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 DAPK3O43293 454 aa15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 ACSL4O60488 711 aa15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 GREM1O60565 184 aa15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 STC2O76061 302 aa15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 SEC31AO94979 1220 aaKnown RBP15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 KRT14P02533 472 aa15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 RPL21P46778 160 aaKnown RBP15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 SLC11A2P49281 568 aa15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 HARS2P49590 506 aaKnown RBP15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 RGS19P49795 217 aa15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 KCNQ1P51787 676 aa15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 CAV1Q03135 178 aa15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 P3H1Q32P28 736 aa15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 C1orf228Q6PIY5 440 aa15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 ZDHHC24Q6UX98 284 aa15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 C4orf22Q6V702 233 aa15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 C14orf80Q86SX3 495 aa15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 LRRC49Q8IUZ0 686 aa15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 FAM217AQ8IXS0 508 aa15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 NPWQ8N729 165 aa15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 ZNF707Q96C28 371 aaPredicted RBP15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 MRPL38Q96DV4 380 aaKnown RBP15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 SNF8Q96H20 258 aa15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 TMEM121Q9BTD3 319 aa15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 PRKD2Q9BZL6 878 aa15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 NACA2Q9H009 215 aa15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 ARFGAP3Q9NP61 516 aa15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 TMEM248Q9NWD8 314 aa15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 ZNF212Q9UDV6 495 aa15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 MFHAS1Q9Y4C4 1052 aa15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 HEY1Q9Y5J3 304 aa15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 RANBP2P49792 3224 aaKnown RBP15.37■□□□□ 0.05
CCDC88C-202ENST00000334448 CCL16O15467 120 aa15.36■□□□□ 0.05
CCDC88C-202ENST00000334448 MOCS2O96007 188 aaPredicted RBP15.36■□□□□ 0.05
CCDC88C-202ENST00000334448 PTPN2P17706 415 aa15.36■□□□□ 0.05
CCDC88C-202ENST00000334448 ITIH2P19823 946 aa15.36■□□□□ 0.05
CCDC88C-202ENST00000334448 TRADDQ15628 312 aa15.36■□□□□ 0.05
CCDC88C-202ENST00000334448 FAM133BQ5BKY9 247 aaKnown RBP15.36■□□□□ 0.05
CCDC88C-202ENST00000334448 NADSYN1Q6IA69 706 aa15.36■□□□□ 0.05
CCDC88C-202ENST00000334448 FBXL22Q6P050 247 aa15.36■□□□□ 0.05
CCDC88C-202ENST00000334448 DARS2Q6PI48 645 aaKnown RBP15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms