RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 WDCPQ9H6R7 721 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 SAMD4AQ9UPU9 718 aaKnown RBP4.11□□□□□ -1.75
USH2A-201ENST00000307340 MYRFQ9Y2G1 1151 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 PRR23D1E9PI22 279 aaPredicted RBP4.11□□□□□ -1.75
USH2A-201ENST00000307340 C2CD2LO14523 706 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 PRR23D2P0DMB1 279 aaPredicted RBP4.11□□□□□ -1.75
USH2A-201ENST00000307340 ALAS1P13196 640 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 CYP11B2P19099 503 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 PDIA2Q13087 525 aaKnown RBP4.11□□□□□ -1.75
USH2A-201ENST00000307340 PTK7Q13308 1070 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 KRT33BQ14525 404 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 RFTN1Q14699 578 aaPredicted RBP4.11□□□□□ -1.75
USH2A-201ENST00000307340 C6orf10Q5SRN2 563 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 ZNF589Q86UQ0 364 aaPredicted RBP4.11□□□□□ -1.75
USH2A-201ENST00000307340 ABRAQ8N0Z2 381 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 NBPF15Q8N660 670 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 IRGQQ8WZA9 623 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 SLITRK2Q9H156 845 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 DDX18Q9NVP1 670 aaKnown RBP4.11□□□□□ -1.75
USH2A-201ENST00000307340 HSPBP1Q9NZL4 362 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 VANGL2Q9ULK5 521 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 PCDHB1Q9Y5F3 818 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 PCDHGB6Q9Y5F9 930 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 TUBGCP6Q96RT7 1819 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 ADAMDEC1O15204 470 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 RAD51BO15315 384 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 CALCAP01258 141 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 MYL12AP19105 171 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 FOXM1Q08050 763 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 FAM102AQ5T9C2 384 aaPredicted RBP4.11□□□□□ -1.75
USH2A-201ENST00000307340 KLHDC7AQ5VTJ3 777 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 TRIM40Q6P9F5 258 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 C11orf57Q6ZUT1 292 aaPredicted RBP4.11□□□□□ -1.75
USH2A-201ENST00000307340 SLC13A5Q86YT5 568 aaPredicted RBP4.11□□□□□ -1.75
USH2A-201ENST00000307340 SIRT2Q8IXJ6 389 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 CDK20Q8IZL9 346 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 CPXCR1Q8N123 301 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 DPP10Q8N608 796 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 QKIQ96PU8 341 aaKnown RBP eCLIP4.11□□□□□ -1.75
USH2A-201ENST00000307340 VRK1Q99986 396 aaPredicted RBP4.11□□□□□ -1.75
USH2A-201ENST00000307340 PTPRJQ12913 1337 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 HOXA10P31260 410 aaPredicted RBP4.11□□□□□ -1.75
USH2A-201ENST00000307340 SLC29A2Q14542 456 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 TBC1D10BQ4KMP7 808 aaPredicted RBP4.11□□□□□ -1.75
USH2A-201ENST00000307340 TBC1D21Q8IYX1 336 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 ZFP28Q8NHY6 868 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 RAPGEF5Q92565 580 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 FAM153AQ9UHL3 310 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 XPO7Q9UIA9 1087 aaKnown RBP4.11□□□□□ -1.75
USH2A-201ENST00000307340 ALG6Q9Y672 507 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 DICER1Q9UPY3 1922 aaKnown RBP4.11□□□□□ -1.75
USH2A-201ENST00000307340 SHOX2O60902 331 aaPredicted RBP4.11□□□□□ -1.75
USH2A-201ENST00000307340 CAPGP40121 348 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 SUOXP51687 545 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 FOXO4P98177 505 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 PRKG2Q13237 762 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 SLC44A4Q53GD3 710 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 BTBD8Q5XKL5 378 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 TTI2Q6NXR4 508 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 METTL7BQ6UX53 244 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 SLC22A17Q8WUG5 538 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 LGR6Q9HBX8 967 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 NECTIN3Q9NQS3 549 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 TLR8Q9NR97 1041 aaKnown RBP4.11□□□□□ -1.75
USH2A-201ENST00000307340 THG1LQ9NWX6 298 aaKnown RBP4.11□□□□□ -1.75
USH2A-201ENST00000307340 MAPK8IP1Q9UQF2 711 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 A0A0G2JND7 137 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 CHKAP35790 457 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 TAF6P49848 677 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 TRAP1Q12931 704 aaKnown RBP4.11□□□□□ -1.75
USH2A-201ENST00000307340 BIKQ13323 160 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 ATP1A4Q13733 1029 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 CMPK2Q5EBM0 449 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 SVOPLQ8N434 492 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 NAT16Q8N8M0 369 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 SCGB3A2Q96PL1 93 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 RBP3P10745 1247 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 MYBPC3Q14896 1274 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 PKN1Q16512 942 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 KCTD16Q68DU8 428 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 TMC3Q7Z5M5 1100 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 KBTBD8Q8NFY9 601 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 ZSCAN32Q9NX65 697 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP4.11□□□□□ -1.75
USH2A-201ENST00000307340 CAB39Q9Y376 341 aaPredicted RBP4.11□□□□□ -1.75
USH2A-201ENST00000307340 TLL2Q9Y6L7 1015 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 ECM29Q5VYK3 1845 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 BCL9O00512 1426 aa4.11□□□□□ -1.75
USH2A-201ENST00000307340 GPD1P21695 349 aa4.1□□□□□ -1.75
USH2A-201ENST00000307340 PAICSP22234 425 aaKnown RBP4.1□□□□□ -1.75
USH2A-201ENST00000307340 MGAT5Q09328 741 aa4.1□□□□□ -1.75
USH2A-201ENST00000307340 PDIA6Q15084 440 aa4.1□□□□□ -1.75
USH2A-201ENST00000307340 RNF180Q86T96 592 aa4.1□□□□□ -1.75
USH2A-201ENST00000307340 ARRDC4Q8NCT1 418 aa4.1□□□□□ -1.75
USH2A-201ENST00000307340 DIS3LQ8TF46 1054 aaKnown RBP4.1□□□□□ -1.75
USH2A-201ENST00000307340 ATP8B4Q8TF62 1192 aa4.1□□□□□ -1.75
USH2A-201ENST00000307340 GLMNQ92990 594 aa4.1□□□□□ -1.75
USH2A-201ENST00000307340 MYDGFQ969H8 173 aa4.1□□□□□ -1.75
USH2A-201ENST00000307340 OTUD5Q96G74 571 aa4.1□□□□□ -1.75
USH2A-201ENST00000307340 PPARGC1AQ9UBK2 798 aaKnown RBP4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms