RNA–Protein interactions for RNA: ENST00000307106.3

SMIM4-201, Transcript of small integral membrane protein 4, humanhuman

TSL 2 BASIC

Gene SMIM4, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM4-201ENST00000307106 CDCP2Q5VXM1 449 aa12.35□□□□□ -0.43
SMIM4-201ENST00000307106 MBLAC2Q68D91 279 aa12.35□□□□□ -0.43
SMIM4-201ENST00000307106 SPATS2Q86XZ4 545 aaKnown RBP12.35□□□□□ -0.43
SMIM4-201ENST00000307106 ZC3H3Q8IXZ2 948 aaKnown RBP12.35□□□□□ -0.43
SMIM4-201ENST00000307106 GGA2Q9UJY4 613 aa12.35□□□□□ -0.43
SMIM4-201ENST00000307106 SLC12A8A0AV02 714 aa12.34□□□□□ -0.43
SMIM4-201ENST00000307106 C10orf142B7Z368 130 aa12.34□□□□□ -0.43
SMIM4-201ENST00000307106 RNASEH1O60930 286 aaKnown RBP12.34□□□□□ -0.43
SMIM4-201ENST00000307106 RNASEH2AO75792 299 aaKnown RBP12.34□□□□□ -0.43
SMIM4-201ENST00000307106 PABPC1P11940 636 aaKnown RBP12.34□□□□□ -0.43
SMIM4-201ENST00000307106 CCR5P51681 352 aa12.34□□□□□ -0.43
SMIM4-201ENST00000307106 ZNF211Q13398 564 aaPredicted RBP12.34□□□□□ -0.43
SMIM4-201ENST00000307106 CST6Q15828 149 aa12.34□□□□□ -0.43
SMIM4-201ENST00000307106 HS1BP3Q53T59 392 aa12.34□□□□□ -0.43
SMIM4-201ENST00000307106 ZNF574Q6ZN55 896 aaPredicted RBP12.34□□□□□ -0.43
SMIM4-201ENST00000307106 CCDC81Q6ZN84 652 aa12.34□□□□□ -0.43
SMIM4-201ENST00000307106 ATG14Q6ZNE5 492 aa12.34□□□□□ -0.43
SMIM4-201ENST00000307106 KIAA0907Q7Z7F0 614 aaPredicted RBP12.34□□□□□ -0.43
SMIM4-201ENST00000307106 UNC93AQ86WB7 457 aa12.34□□□□□ -0.43
SMIM4-201ENST00000307106 CCDC65Q8IXS2 484 aa12.34□□□□□ -0.43
SMIM4-201ENST00000307106 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.34□□□□□ -0.43
SMIM4-201ENST00000307106 MFSD2AQ8NA29 543 aa12.34□□□□□ -0.43
SMIM4-201ENST00000307106 XXYLT1Q8NBI6 393 aa12.34□□□□□ -0.43
SMIM4-201ENST00000307106 HPS3Q969F9 1004 aa12.34□□□□□ -0.43
SMIM4-201ENST00000307106 CYFIP2Q96F07 1278 aa12.34□□□□□ -0.43
SMIM4-201ENST00000307106 OMDQ99983 421 aa12.34□□□□□ -0.43
SMIM4-201ENST00000307106 AGPAT3Q9NRZ7 376 aa12.34□□□□□ -0.43
SMIM4-201ENST00000307106 MARCH2Q9P0N8 246 aa12.34□□□□□ -0.43
SMIM4-201ENST00000307106 ANKMY1Q9P2S6 941 aa12.34□□□□□ -0.43
SMIM4-201ENST00000307106 DACH1Q9UI36 760 aa12.34□□□□□ -0.43
SMIM4-201ENST00000307106 STRIP2Q9ULQ0 834 aa12.34□□□□□ -0.43
SMIM4-201ENST00000307106 FZD4Q9ULV1 537 aa12.34□□□□□ -0.43
SMIM4-201ENST00000307106 SCN8AQ9UQD0 1980 aa12.34□□□□□ -0.43
SMIM4-201ENST00000307106 CLIC2O15247 247 aa12.33□□□□□ -0.44
SMIM4-201ENST00000307106 TGFB1I1O43294 461 aa12.33□□□□□ -0.44
SMIM4-201ENST00000307106 OPA1O60313 960 aa12.33□□□□□ -0.44
SMIM4-201ENST00000307106 SIN3BO75182 1162 aa12.33□□□□□ -0.44
SMIM4-201ENST00000307106 KIF20AO95235 890 aa12.33□□□□□ -0.44
SMIM4-201ENST00000307106 P4HA1P13674 534 aa12.33□□□□□ -0.44
SMIM4-201ENST00000307106 POLR2EP19388 210 aaKnown RBP12.33□□□□□ -0.44
SMIM4-201ENST00000307106 TRIM21P19474 475 aaKnown RBP12.33□□□□□ -0.44
SMIM4-201ENST00000307106 TXLNAP40222 546 aa12.33□□□□□ -0.44
SMIM4-201ENST00000307106 CASP4P49662 377 aa12.33□□□□□ -0.44
SMIM4-201ENST00000307106 NFKB2Q00653 900 aa12.33□□□□□ -0.44
SMIM4-201ENST00000307106 EHHADHQ08426 723 aa12.33□□□□□ -0.44
SMIM4-201ENST00000307106 NCOA4Q13772 614 aa12.33□□□□□ -0.44
SMIM4-201ENST00000307106 C3orf38Q5JPI3 329 aa12.33□□□□□ -0.44
SMIM4-201ENST00000307106 NAPEPLDQ6IQ20 393 aa12.33□□□□□ -0.44
SMIM4-201ENST00000307106 RSRC2Q7L4I2 434 aaKnown RBP12.33□□□□□ -0.44
SMIM4-201ENST00000307106 MMAAQ8IVH4 418 aaKnown RBP12.33□□□□□ -0.44
SMIM4-201ENST00000307106 EXD3Q8N9H8 876 aa12.33□□□□□ -0.44
SMIM4-201ENST00000307106 PLD4Q96BZ4 506 aa12.33□□□□□ -0.44
SMIM4-201ENST00000307106 CCDC97Q96F63 343 aaPredicted RBP12.33□□□□□ -0.44
SMIM4-201ENST00000307106 TPX2Q9ULW0 747 aaKnown RBP12.33□□□□□ -0.44
SMIM4-201ENST00000307106 SATB2Q9UPW6 733 aa12.33□□□□□ -0.44
SMIM4-201ENST00000307106 USP3Q9Y6I4 520 aa12.33□□□□□ -0.44
SMIM4-201ENST00000307106 A0A1B0GVM2 712 aa12.32□□□□□ -0.44
SMIM4-201ENST00000307106 EIF3DO15371 548 aaKnown RBP eCLIP12.32□□□□□ -0.44
SMIM4-201ENST00000307106 STX6O43752 255 aa12.32□□□□□ -0.44
SMIM4-201ENST00000307106 MAGEC1O60732 1142 aa12.32□□□□□ -0.44
SMIM4-201ENST00000307106 RBMS1P29558 406 aaKnown RBP12.32□□□□□ -0.44
SMIM4-201ENST00000307106 SLC8A1P32418 973 aa12.32□□□□□ -0.44
SMIM4-201ENST00000307106 CD70P32970 193 aa12.32□□□□□ -0.44
SMIM4-201ENST00000307106 STAT6P42226 847 aa12.32□□□□□ -0.44
SMIM4-201ENST00000307106 ADPRHP54922 357 aa12.32□□□□□ -0.44
SMIM4-201ENST00000307106 ZNF445P59923 1031 aa12.32□□□□□ -0.44
SMIM4-201ENST00000307106 ST8SIA6P61647 398 aa12.32□□□□□ -0.44
SMIM4-201ENST00000307106 ASIC1P78348 528 aa12.32□□□□□ -0.44
SMIM4-201ENST00000307106 SKOR1P84550 965 aa12.32□□□□□ -0.44
SMIM4-201ENST00000307106 IGF2-ASQ6U949 168 aa12.32□□□□□ -0.44
SMIM4-201ENST00000307106 CCDC73Q6ZRK6 1079 aa12.32□□□□□ -0.44
SMIM4-201ENST00000307106 SND1Q7KZF4 910 aaKnown RBP eCLIP12.32□□□□□ -0.44
SMIM4-201ENST00000307106 TMC6Q7Z403 805 aa12.32□□□□□ -0.44
SMIM4-201ENST00000307106 SLC25A45Q8N413 288 aa12.32□□□□□ -0.44
SMIM4-201ENST00000307106 OR14C36Q8NHC7 312 aa12.32□□□□□ -0.44
SMIM4-201ENST00000307106 WFDC5Q8TCV5 224 aa12.32□□□□□ -0.44
SMIM4-201ENST00000307106 TMA16Q96EY4 203 aaKnown RBP12.32□□□□□ -0.44
SMIM4-201ENST00000307106 MYO19Q96H55 970 aa12.32□□□□□ -0.44
SMIM4-201ENST00000307106 TWNKQ96RR1 684 aa12.32□□□□□ -0.44
SMIM4-201ENST00000307106 TEX15Q9BXT5 2789 aa12.32□□□□□ -0.44
SMIM4-201ENST00000307106 USP9XQ93008 2570 aaPredicted RBP12.31□□□□□ -0.44
SMIM4-201ENST00000307106 FFAR2O15552 330 aa12.31□□□□□ -0.44
SMIM4-201ENST00000307106 LATO43561 262 aa12.31□□□□□ -0.44
SMIM4-201ENST00000307106 VNN1O95497 513 aa12.31□□□□□ -0.44
SMIM4-201ENST00000307106 CKMT1AP12532 417 aa12.31□□□□□ -0.44
SMIM4-201ENST00000307106 GJB2P29033 226 aa12.31□□□□□ -0.44
SMIM4-201ENST00000307106 HARS2P49590 506 aaKnown RBP12.31□□□□□ -0.44
SMIM4-201ENST00000307106 PPP2CBP62714 309 aa12.31□□□□□ -0.44
SMIM4-201ENST00000307106 PPP2CAP67775 309 aa12.31□□□□□ -0.44
SMIM4-201ENST00000307106 TRIP4Q15650 581 aaPredicted RBP12.31□□□□□ -0.44
SMIM4-201ENST00000307106 HNRNPA1L2Q32P51 320 aaKnown RBP12.31□□□□□ -0.44
SMIM4-201ENST00000307106 ZSCAN23Q3MJ62 389 aa12.31□□□□□ -0.44
SMIM4-201ENST00000307106 SGO2Q562F6 1265 aa12.31□□□□□ -0.44
SMIM4-201ENST00000307106 PRPF39Q86UA1 669 aaKnown RBP12.31□□□□□ -0.44
SMIM4-201ENST00000307106 IQCHQ86VS3 1027 aa12.31□□□□□ -0.44
SMIM4-201ENST00000307106 ARHGAP18Q8N392 663 aa12.31□□□□□ -0.44
SMIM4-201ENST00000307106 AADATQ8N5Z0 425 aa12.31□□□□□ -0.44
SMIM4-201ENST00000307106 OR4C6Q8NH72 309 aa12.31□□□□□ -0.44
SMIM4-201ENST00000307106 ZNF507Q8TCN5 953 aa12.31□□□□□ -0.44
SMIM4-201ENST00000307106 PLEKHO2Q8TD55 490 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms