RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 TFAP2DQ7Z6R9 452 aa17.13■□□□□ 0.33
PHRF1-201ENST00000264555 TMPRSS6Q8IU80 811 aa17.13■□□□□ 0.33
PHRF1-201ENST00000264555 PSTKQ8IV42 348 aaKnown RBP17.13■□□□□ 0.33
PHRF1-201ENST00000264555 RAB42Q8N4Z0 105 aa17.13■□□□□ 0.33
PHRF1-201ENST00000264555 C12orf29Q8N999 325 aa17.13■□□□□ 0.33
PHRF1-201ENST00000264555 E9PBE3 544 aa17.13■□□□□ 0.33
PHRF1-201ENST00000264555 KLHL41O60662 606 aa17.13■□□□□ 0.33
PHRF1-201ENST00000264555 KCNA4P22459 653 aa17.13■□□□□ 0.33
PHRF1-201ENST00000264555 PTPN20Q4JDL3 420 aa17.13■□□□□ 0.33
PHRF1-201ENST00000264555 FAM171A1Q5VUB5 890 aa17.13■□□□□ 0.33
PHRF1-201ENST00000264555 EXOC3L1Q86VI1 746 aa17.13■□□□□ 0.33
PHRF1-201ENST00000264555 IL1RL2Q9HB29 575 aa17.13■□□□□ 0.33
PHRF1-201ENST00000264555 PKD2L2Q9NZM6 624 aa17.13■□□□□ 0.33
PHRF1-201ENST00000264555 NOCTQ9UK39 431 aaKnown RBP17.13■□□□□ 0.33
PHRF1-201ENST00000264555 ZNF541Q9H0D2 1346 aa17.13■□□□□ 0.33
PHRF1-201ENST00000264555 CST3P01034 146 aaPredicted RBP17.13■□□□□ 0.33
PHRF1-201ENST00000264555 FOXD4Q12950 439 aaPredicted RBP17.13■□□□□ 0.33
PHRF1-201ENST00000264555 ARHGAP15Q53QZ3 475 aa17.13■□□□□ 0.33
PHRF1-201ENST00000264555 CES3Q6UWW8 571 aa17.13■□□□□ 0.33
PHRF1-201ENST00000264555 HERC6Q8IVU3 1022 aa17.13■□□□□ 0.33
PHRF1-201ENST00000264555 RUBCNLQ9H714 662 aa17.13■□□□□ 0.33
PHRF1-201ENST00000264555 SAR1AQ9NR31 198 aa17.13■□□□□ 0.33
PHRF1-201ENST00000264555 ROBO1Q9Y6N7 1651 aa17.13■□□□□ 0.33
PHRF1-201ENST00000264555 PMM2O15305 246 aa17.12■□□□□ 0.33
PHRF1-201ENST00000264555 MTA2O94776 668 aa17.12■□□□□ 0.33
PHRF1-201ENST00000264555 FKBP1BP68106 108 aa17.12■□□□□ 0.33
PHRF1-201ENST00000264555 PTP4A2Q12974 167 aa17.12■□□□□ 0.33
PHRF1-201ENST00000264555 SLC39A12Q504Y0 691 aa17.12■□□□□ 0.33
PHRF1-201ENST00000264555 PPP1R26Q5T8A7 1209 aaPredicted RBP17.12■□□□□ 0.33
PHRF1-201ENST00000264555 JOSD2Q8TAC2 188 aa17.12■□□□□ 0.33
PHRF1-201ENST00000264555 BTBD10Q9BSF8 475 aa17.12■□□□□ 0.33
PHRF1-201ENST00000264555 DYNC1I2Q13409 638 aaKnown RBP17.12■□□□□ 0.33
PHRF1-201ENST00000264555 WASHC2DQ5SRD0 308 aa17.12■□□□□ 0.33
PHRF1-201ENST00000264555 BNC2Q6ZN30 1099 aaPredicted RBP17.12■□□□□ 0.33
PHRF1-201ENST00000264555 YAF2Q8IY57 180 aa17.12■□□□□ 0.33
PHRF1-201ENST00000264555 CARNMT1Q8N4J0 409 aa17.12■□□□□ 0.33
PHRF1-201ENST00000264555 UROC1Q96N76 676 aa17.12■□□□□ 0.33
PHRF1-201ENST00000264555 MYLK2Q9H1R3 596 aa17.12■□□□□ 0.33
PHRF1-201ENST00000264555 WRAP73Q9P2S5 460 aaPredicted RBP17.12■□□□□ 0.33
PHRF1-201ENST00000264555 FGF10O15520 208 aaPredicted RBP17.12■□□□□ 0.33
PHRF1-201ENST00000264555 VAPBO95292 243 aa17.12■□□□□ 0.33
PHRF1-201ENST00000264555 ASMTLO95671 621 aa17.12■□□□□ 0.33
PHRF1-201ENST00000264555 ZC3H12AQ5D1E8 599 aaKnown RBP17.12■□□□□ 0.33
PHRF1-201ENST00000264555 LLGL2Q6P1M3 1020 aa17.12■□□□□ 0.33
PHRF1-201ENST00000264555 BHMTQ93088 406 aa17.12■□□□□ 0.33
PHRF1-201ENST00000264555 ACSS3Q9H6R3 686 aa17.12■□□□□ 0.33
PHRF1-201ENST00000264555 VPS28Q9UK41 221 aa17.12■□□□□ 0.33
PHRF1-201ENST00000264555 URODP06132 367 aa17.12■□□□□ 0.33
PHRF1-201ENST00000264555 TPBGLP0DKB5 382 aa17.12■□□□□ 0.33
PHRF1-201ENST00000264555 PAX3P23760 479 aa17.12■□□□□ 0.33
PHRF1-201ENST00000264555 OR1E1P30953 314 aa17.12■□□□□ 0.33
PHRF1-201ENST00000264555 CXCL17Q6UXB2 119 aa17.12■□□□□ 0.33
PHRF1-201ENST00000264555 SH3GL2Q99962 352 aa17.12■□□□□ 0.33
PHRF1-201ENST00000264555 TMEM106CQ9BVX2 250 aa17.12■□□□□ 0.33
PHRF1-201ENST00000264555 TCF7L2Q9NQB0 619 aa17.12■□□□□ 0.33
PHRF1-201ENST00000264555 WDR70Q9NW82 654 aa17.12■□□□□ 0.33
PHRF1-201ENST00000264555 STX18Q9P2W9 335 aaKnown RBP17.12■□□□□ 0.33
PHRF1-201ENST00000264555 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.12■□□□□ 0.333e-6■■■■□ 19.3
PHRF1-201ENST00000264555 PCDHA11Q9Y5I1 949 aa17.12■□□□□ 0.33
PHRF1-201ENST00000264555 PHRF1Q9P1Y6 1649 aaKnown RBP17.12■□□□□ 0.33
PHRF1-201ENST00000264555 ATP4AP20648 1035 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 DSG1Q02413 1049 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 LCLAT1Q6UWP7 414 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 GALNT4Q8N4A0 578 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 CEP70Q8NHQ1 597 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 RFWD2Q8NHY2 731 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 PWWP2AQ96N64 755 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 CCDC90BQ9GZT6 254 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 IL22Q9GZX6 179 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 ENTPD7Q9NQZ7 604 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 WWOXQ9NZC7 414 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 BTBD7Q9P203 1132 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 VTI1BQ9UEU0 232 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 PCDHGC3Q9UN70 934 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 ADAMTSL3P82987 1691 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 CBX4O00257 560 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 CILPO75339 1184 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 PSMB4P28070 264 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 MATKP42679 507 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 TRMT5Q32P41 509 aaKnown RBP17.11■□□□□ 0.33
PHRF1-201ENST00000264555 XPNPEP1Q9NQW7 623 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 SOX13Q9UN79 622 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 COQ4Q9Y3A0 265 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 MMP13P45452 471 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 SCNN1BP51168 640 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 RHOAP61586 193 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 TOP6BLQ8N6T0 577 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 CXorf38Q8TB03 319 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 FNIP1Q8TF40 1166 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 APBA2Q99767 749 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 SMIM35A0A1B0GVV1 85 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 PRPF4O43172 522 aaKnown RBP eCLIP17.11■□□□□ 0.331e-6■■□□□ 11.8
PHRF1-201ENST00000264555 CKMP06732 381 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 SERPINB3P29508 390 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 RPL9P32969 192 aaKnown RBP17.11■□□□□ 0.33
PHRF1-201ENST00000264555 EPHB3P54753 998 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 DAW1Q8N136 415 aa17.11■□□□□ 0.33
PHRF1-201ENST00000264555 ADSSP30520 456 aa17.1■□□□□ 0.33
PHRF1-201ENST00000264555 KAT2BQ92831 832 aa17.1■□□□□ 0.33
PHRF1-201ENST00000264555 PGLYRP2Q96PD5 576 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms