RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 ROPN1BQ9BZX4 212 aaPredicted RBP11.62□□□□□ -0.55
PTPN4-201ENST00000263708 ROPN1Q9HAT0 212 aaPredicted RBP11.62□□□□□ -0.55
PTPN4-201ENST00000263708 RWDD3Q9Y3V2 267 aa11.62□□□□□ -0.55
PTPN4-201ENST00000263708 GPC6Q9Y625 555 aaPredicted RBP11.62□□□□□ -0.55
PTPN4-201ENST00000263708 KDM5CP41229 1560 aa11.62□□□□□ -0.55
PTPN4-201ENST00000263708 MAGEB3O15480 346 aa11.62□□□□□ -0.55
PTPN4-201ENST00000263708 CCDC153Q494R4 210 aa11.62□□□□□ -0.55
PTPN4-201ENST00000263708 LPAR1Q92633 364 aa11.62□□□□□ -0.55
PTPN4-201ENST00000263708 RASSF1Q9NS23 344 aa11.62□□□□□ -0.55
PTPN4-201ENST00000263708 KDM6AO15550 1401 aaPredicted RBP11.61□□□□□ -0.55
PTPN4-201ENST00000263708 INSRP06213 1382 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 PQBP1O60828 265 aaKnown RBP11.61□□□□□ -0.55
PTPN4-201ENST00000263708 OR56A5P0C7T3 313 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 DCUN1D5Q9BTE7 237 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 MRPL42Q9Y6G3 142 aaKnown RBP11.61□□□□□ -0.55
PTPN4-201ENST00000263708 C19orf81C9J6K1 198 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 HOXA2O43364 376 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 KLK7P49862 253 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 CYP4F2P78329 520 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 CYP4F3Q08477 520 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 INSCQ1MX18 579 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 MSANTD1Q6ZTZ1 278 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 MAT2BQ9NZL9 334 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 A0A1W2PQC6 194 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 NR3C2P08235 984 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 FGFR3P22607 806 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 DLG1Q12959 904 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 TKFCQ3LXA3 575 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 RNF145Q96MT1 663 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 CHP1Q99653 195 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 SENP6Q9GZR1 1112 aaPredicted RBP11.61□□□□□ -0.55
PTPN4-201ENST00000263708 KCNN2Q9H2S1 579 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 CXorf56Q9H5V9 222 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 SLC40A1Q9NP59 571 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 USP18Q9UMW8 372 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 CACNA2D1P54289 1103 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 BNC1Q01954 994 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 SEZ6Q53EL9 994 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 CCDC54Q8NEL0 328 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 CBWD1Q9BRT8 395 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 DGCR6LQ9BY27 220 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 MGAT4AQ9UM21 535 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 COG5Q9UP83 839 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 CHD1O14646 1710 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 COILP38432 576 aaPredicted RBP11.61□□□□□ -0.55
PTPN4-201ENST00000263708 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.61□□□□□ -0.55
PTPN4-201ENST00000263708 CGRRF1Q99675 332 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 CNPY3Q9BT09 278 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 NCKIPSDQ9NZQ3 722 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 ZNHIT2Q9UHR6 403 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 NUMA1Q14980 2115 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 POM121L1PQ3SYA9 428 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 TRNT1Q96Q11 434 aaKnown RBP11.61□□□□□ -0.55
PTPN4-201ENST00000263708 INTS7Q9NVH2 962 aaKnown RBP11.61□□□□□ -0.55
PTPN4-201ENST00000263708 DPP7Q9UHL4 492 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 GPSM3Q9Y4H4 160 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 ATP10AO60312 1499 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 WDR19Q8NEZ3 1342 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 NT5C2P49902 561 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 ADGRG2Q8IZP9 1017 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 FKBP14Q9NWM8 211 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 UBDO15205 165 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 PLOD3O60568 738 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 HOXC12P31275 282 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 TLX1P31314 330 aaPredicted RBP11.61□□□□□ -0.55
PTPN4-201ENST00000263708 RASA2Q15283 850 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 EIF2S3LQ2VIR3 472 aaKnown RBP11.61□□□□□ -0.55
PTPN4-201ENST00000263708 RNF19BQ6ZMZ0 732 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 C1QTNF1Q9BXJ1 281 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 LRRC40Q9H9A6 602 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 TPRKBQ9Y3C4 175 aa11.61□□□□□ -0.55
PTPN4-201ENST00000263708 SNAP23O00161 211 aa11.6□□□□□ -0.55
PTPN4-201ENST00000263708 CHRNGP07510 517 aa11.6□□□□□ -0.55
PTPN4-201ENST00000263708 CYP2A6P11509 494 aaPredicted RBP11.6□□□□□ -0.55
PTPN4-201ENST00000263708 H2AFXP16104 143 aaPredicted RBP11.6□□□□□ -0.55
PTPN4-201ENST00000263708 NAB2Q15742 525 aa11.6□□□□□ -0.55
PTPN4-201ENST00000263708 PRMT9Q6P2P2 845 aa11.6□□□□□ -0.55
PTPN4-201ENST00000263708 ARMC8Q8IUR7 673 aa11.6□□□□□ -0.55
PTPN4-201ENST00000263708 ALKBH4Q9NXW9 302 aa11.6□□□□□ -0.55
PTPN4-201ENST00000263708 PLEKHG2Q9H7P9 1386 aa11.6□□□□□ -0.55
PTPN4-201ENST00000263708 OR1E1P30953 314 aa11.6□□□□□ -0.55
PTPN4-201ENST00000263708 POLD2P49005 469 aa11.6□□□□□ -0.55
PTPN4-201ENST00000263708 TOB2Q14106 344 aaPredicted RBP11.6□□□□□ -0.55
PTPN4-201ENST00000263708 UTS2BQ765I0 119 aa11.6□□□□□ -0.55
PTPN4-201ENST00000263708 ZNF677Q86XU0 584 aa11.6□□□□□ -0.55
PTPN4-201ENST00000263708 ZNF248Q8NDW4 579 aa11.6□□□□□ -0.55
PTPN4-201ENST00000263708 EPS8L3Q8TE67 593 aaKnown RBP11.6□□□□□ -0.55
PTPN4-201ENST00000263708 ZDHHC6Q9H6R6 413 aa11.6□□□□□ -0.55
PTPN4-201ENST00000263708 PCDHB9Q9Y5E1 797 aa11.6□□□□□ -0.55
PTPN4-201ENST00000263708 TBKBP1A7MCY6 615 aa11.6□□□□□ -0.55
PTPN4-201ENST00000263708 ZNF432O94892 652 aa11.6□□□□□ -0.55
PTPN4-201ENST00000263708 POLR2EP19388 210 aaKnown RBP11.6□□□□□ -0.55
PTPN4-201ENST00000263708 GARTP22102 1010 aa11.6□□□□□ -0.55
PTPN4-201ENST00000263708 EN1Q05925 392 aaPredicted RBP11.6□□□□□ -0.55
PTPN4-201ENST00000263708 DGCR6Q14129 220 aa11.6□□□□□ -0.55
PTPN4-201ENST00000263708 PTPAQ15257 358 aa11.6□□□□□ -0.55
PTPN4-201ENST00000263708 MID1IP1Q9NPA3 183 aa11.6□□□□□ -0.55
PTPN4-201ENST00000263708 GGA3Q9NZ52 723 aa11.6□□□□□ -0.55
PTPN4-201ENST00000263708 FOXN1O15353 648 aa11.6□□□□□ -0.55
PTPN4-201ENST00000263708 THP07101 528 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms