RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 P2RY11Q96G91 374 aa19.24■□□□□ 0.67
CPSF3-201ENST00000238112 SNX25Q9H3E2 840 aa19.24■□□□□ 0.67
CPSF3-201ENST00000238112 HES2Q9Y543 173 aa19.24■□□□□ 0.67
CPSF3-201ENST00000238112 PSAT1Q9Y617 370 aa19.24■□□□□ 0.67
CPSF3-201ENST00000238112 TRIP11Q15643 1979 aa19.24■□□□□ 0.67
CPSF3-201ENST00000238112 C6orf222P0C671 652 aaPredicted RBP19.24■□□□□ 0.67
CPSF3-201ENST00000238112 GRK2P25098 689 aa19.24■□□□□ 0.67
CPSF3-201ENST00000238112 MATKP42679 507 aa19.24■□□□□ 0.67
CPSF3-201ENST00000238112 IRX1P78414 480 aaPredicted RBP19.24■□□□□ 0.67
CPSF3-201ENST00000238112 HIC1Q14526 733 aa19.24■□□□□ 0.67
CPSF3-201ENST00000238112 SMAD1Q15797 465 aaKnown RBP19.24■□□□□ 0.67
CPSF3-201ENST00000238112 ZBTB6Q15916 424 aa19.24■□□□□ 0.67
CPSF3-201ENST00000238112 CATSPER4Q7RTX7 472 aa19.24■□□□□ 0.67
CPSF3-201ENST00000238112 PGBD4Q96DM1 585 aa19.24■□□□□ 0.67
CPSF3-201ENST00000238112 HSFY1Q96LI6 401 aa19.24■□□□□ 0.67
CPSF3-201ENST00000238112 CEP41Q9BYV8 373 aa19.24■□□□□ 0.67
CPSF3-201ENST00000238112 PRDM16Q9HAZ2 1276 aa19.24■□□□□ 0.67
CPSF3-201ENST00000238112 GPAMQ9HCL2 828 aa19.24■□□□□ 0.67
CPSF3-201ENST00000238112 SYBUQ9NX95 663 aa19.24■□□□□ 0.67
CPSF3-201ENST00000238112 KCNH4Q9UQ05 1017 aa19.24■□□□□ 0.67
CPSF3-201ENST00000238112 ARHGAP42A6NI28 874 aa19.23■□□□□ 0.67
CPSF3-201ENST00000238112 POLBP06746 335 aa19.23■□□□□ 0.67
CPSF3-201ENST00000238112 PSMB4P28070 264 aa19.23■□□□□ 0.67
CPSF3-201ENST00000238112 TYK2P29597 1187 aa19.23■□□□□ 0.67
CPSF3-201ENST00000238112 GARSP41250 739 aaKnown RBP19.23■□□□□ 0.67
CPSF3-201ENST00000238112 RPL34P49207 117 aaKnown RBP19.23■□□□□ 0.67
CPSF3-201ENST00000238112 TUBB3Q13509 450 aa19.23■□□□□ 0.67
CPSF3-201ENST00000238112 TTLL12Q14166 644 aaPredicted RBP19.23■□□□□ 0.67
CPSF3-201ENST00000238112 PDK1Q15118 436 aa19.23■□□□□ 0.67
CPSF3-201ENST00000238112 INSCQ1MX18 579 aa19.23■□□□□ 0.67
CPSF3-201ENST00000238112 SLC25A52Q3SY17 297 aa19.23■□□□□ 0.67
CPSF3-201ENST00000238112 FBXO47Q5MNV8 452 aa19.23■□□□□ 0.67
CPSF3-201ENST00000238112 C10orf107Q8IVU9 208 aa19.23■□□□□ 0.67
CPSF3-201ENST00000238112 CRYBG2Q8N1P7 616 aa19.23■□□□□ 0.67
CPSF3-201ENST00000238112 NME8Q8N427 588 aa19.23■□□□□ 0.67
CPSF3-201ENST00000238112 SLC2A14Q8TDB8 520 aa19.23■□□□□ 0.67
CPSF3-201ENST00000238112 TTC1Q99614 292 aa19.23■□□□□ 0.67
CPSF3-201ENST00000238112 EIF2AQ9BY44 585 aaKnown RBP19.23■□□□□ 0.67
CPSF3-201ENST00000238112 DNAI2Q9GZS0 605 aa19.23■□□□□ 0.67
CPSF3-201ENST00000238112 VTA1Q9NP79 307 aa19.23■□□□□ 0.67
CPSF3-201ENST00000238112 DNAJB4Q9UDY4 337 aa19.23■□□□□ 0.67
CPSF3-201ENST00000238112 BAG2O95816 211 aa19.23■□□□□ 0.67
CPSF3-201ENST00000238112 LMO2P25791 158 aa19.23■□□□□ 0.67
CPSF3-201ENST00000238112 HOXA11P31270 313 aaPredicted RBP19.23■□□□□ 0.67
CPSF3-201ENST00000238112 GLUD2P49448 558 aa19.23■□□□□ 0.67
CPSF3-201ENST00000238112 RABGAP1LQ5R372 815 aa19.23■□□□□ 0.67
CPSF3-201ENST00000238112 MARCH8Q5T0T0 291 aa19.23■□□□□ 0.67
CPSF3-201ENST00000238112 FASTKD5Q7L8L6 764 aaKnown RBP19.23■□□□□ 0.67
CPSF3-201ENST00000238112 PSTKQ8IV42 348 aaKnown RBP19.23■□□□□ 0.67
CPSF3-201ENST00000238112 KBTBD2Q8IY47 623 aa19.23■□□□□ 0.67
CPSF3-201ENST00000238112 DEFB106AQ8N104 65 aa19.23■□□□□ 0.67
CPSF3-201ENST00000238112 NETO2Q8NC67 525 aa19.23■□□□□ 0.67
CPSF3-201ENST00000238112 RNF139Q8WU17 664 aa19.23■□□□□ 0.67
CPSF3-201ENST00000238112 KBTBD7Q8WVZ9 684 aa19.23■□□□□ 0.67
CPSF3-201ENST00000238112 RNF19AQ9NV58 838 aa19.23■□□□□ 0.67
CPSF3-201ENST00000238112 SYNJ2BP-COX16A0A087WUM0 186 aa19.22■□□□□ 0.67
CPSF3-201ENST00000238112 PPP1R12AO14974 1030 aaPredicted RBP19.22■□□□□ 0.67
CPSF3-201ENST00000238112 PROCP04070 461 aa19.22■□□□□ 0.67
CPSF3-201ENST00000238112 CPOXP36551 454 aa19.22■□□□□ 0.67
CPSF3-201ENST00000238112 ADCYAP1R1P41586 468 aa19.22■□□□□ 0.67
CPSF3-201ENST00000238112 COPAP53621 1224 aa19.22■□□□□ 0.67
CPSF3-201ENST00000238112 TMEM62Q0P6H9 643 aa19.22■□□□□ 0.67
CPSF3-201ENST00000238112 IFRD2Q12894 506 aaPredicted RBP19.22■□□□□ 0.67
CPSF3-201ENST00000238112 PPIL2Q13356 520 aa19.22■□□□□ 0.67
CPSF3-201ENST00000238112 MAMDC4Q6UXC1 1216 aa19.22■□□□□ 0.67
CPSF3-201ENST00000238112 MOB2Q70IA6 237 aa19.22■□□□□ 0.67
CPSF3-201ENST00000238112 SLC25A41Q8N5S1 370 aa19.22■□□□□ 0.67
CPSF3-201ENST00000238112 EMID1Q96A84 441 aaPredicted RBP19.22■□□□□ 0.67
CPSF3-201ENST00000238112 PPP1R12CQ9BZL4 782 aa19.22■□□□□ 0.67
CPSF3-201ENST00000238112 DNAJC28Q9NX36 388 aa19.22■□□□□ 0.67
CPSF3-201ENST00000238112 COX16Q9P0S2 106 aa19.22■□□□□ 0.67
CPSF3-201ENST00000238112 COPG2Q9UBF2 871 aa19.22■□□□□ 0.67
CPSF3-201ENST00000238112 MAGEA13PA6NCF6 341 aa19.22■□□□□ 0.67
CPSF3-201ENST00000238112 CREB3O43889 395 aa19.22■□□□□ 0.67
CPSF3-201ENST00000238112 SIN3BO75182 1162 aa19.22■□□□□ 0.67
CPSF3-201ENST00000238112 FKBP6O75344 327 aa19.22■□□□□ 0.67
CPSF3-201ENST00000238112 ERVK-10P10266 1014 aa19.22■□□□□ 0.67
CPSF3-201ENST00000238112 MX2P20592 715 aa19.22■□□□□ 0.67
CPSF3-201ENST00000238112 GP5P40197 560 aa19.22■□□□□ 0.67
CPSF3-201ENST00000238112 SLC25A3Q00325 362 aa19.22■□□□□ 0.67
CPSF3-201ENST00000238112 DSG1Q02413 1049 aa19.22■□□□□ 0.67
CPSF3-201ENST00000238112 DCAF6Q58WW2 860 aa19.22■□□□□ 0.67
CPSF3-201ENST00000238112 PPM1JQ5JR12 505 aa19.22■□□□□ 0.67
CPSF3-201ENST00000238112 DPY19L2Q6NUT2 758 aa19.22■□□□□ 0.67
CPSF3-201ENST00000238112 SHCBP1Q8NEM2 672 aa19.22■□□□□ 0.67
CPSF3-201ENST00000238112 IL1RAPL1Q9NZN1 696 aa19.22■□□□□ 0.67
CPSF3-201ENST00000238112 UBQLN1Q9UMX0 589 aaKnown RBP19.22■□□□□ 0.67
CPSF3-201ENST00000238112 RPS6KL1Q9Y6S9 549 aa19.22■□□□□ 0.67
CPSF3-201ENST00000238112 A0A088AWK7 358 aa19.21■□□□□ 0.67
CPSF3-201ENST00000238112 KPNA7A9QM74 516 aa19.21■□□□□ 0.67
CPSF3-201ENST00000238112 MLH1P40692 756 aa19.21■□□□□ 0.67
CPSF3-201ENST00000238112 NAIF1Q69YI7 327 aaPredicted RBP19.21■□□□□ 0.67
CPSF3-201ENST00000238112 NOTUMQ6P988 496 aa19.21■□□□□ 0.67
CPSF3-201ENST00000238112 IZUMO2Q6UXV1 221 aa19.21■□□□□ 0.67
CPSF3-201ENST00000238112 RSPH3Q86UC2 560 aa19.21■□□□□ 0.67
CPSF3-201ENST00000238112 POU5F2Q8N7G0 328 aa19.21■□□□□ 0.67
CPSF3-201ENST00000238112 CERS2Q96G23 380 aa19.21■□□□□ 0.67
CPSF3-201ENST00000238112 CPNE1Q99829 537 aa19.21■□□□□ 0.67
CPSF3-201ENST00000238112 FAM49AQ9H0Q0 323 aaPredicted RBP19.21■□□□□ 0.67
CPSF3-201ENST00000238112 PNPOQ9NVS9 261 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms