RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 PET117Q6UWS5 81 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 LMBR1LQ6UX01 489 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 UBXN10Q96LJ8 280 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 KCNQ5Q9NR82 932 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 CDV3Q9UKY7 258 aaKnown RBP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 ITGA2P17301 1181 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 S100A12P80511 92 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 AMPD2Q01433 879 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 COLEC12Q5KU26 742 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 TMEM108Q6UXF1 575 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 NUDT18Q6ZVK8 323 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 CYP4Z1Q86W10 505 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 ETFBKMTQ8IXQ9 262 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 ZFP82Q8N141 532 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 SYNPOQ8N3V7 929 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 TANKQ92844 425 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 XRN2Q9H0D6 950 aaKnown RBP eCLIP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 COPS7BQ9H9Q2 264 aaPredicted RBP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 PCDHB16Q9NRJ7 776 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 CRNNQ9UBG3 495 aaPredicted RBP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 LOC102724200A0A096LPH7 203 aaPredicted RBP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 FAM196BA6NMK8 535 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 FAM25AB3EWG3 89 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 FAM25CB3EWG5 89 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 FAM25GB3EWG6 89 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 PER2O15055 1255 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 GSTA2P09210 222 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 DGKAP23743 735 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 DLSTP36957 453 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 MAGEA4P43358 317 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 ENPEPQ07075 957 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 SLFN12LQ6IEE8 588 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 ZNF783Q6ZMS7 281 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 MAGEC3Q8TD91 643 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 WFIKKN2Q8TEU8 576 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 SNX33Q8WV41 574 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 DNAJB3Q8WWF6 145 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 A1CFQ9NQ94 594 aaKnown RBP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 ANAPC2Q9UJX6 822 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 FLVCR2Q9UPI3 526 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 DLGAP4Q9Y2H0 992 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 PLEKHH1Q9ULM0 1364 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 ARHGEF35A5YM69 484 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 WASH4PA8MWX3 477 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 MATN2O00339 956 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 GSTM4Q03013 218 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 RNF220Q5VTB9 566 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 FBXO31Q5XUX0 539 aaPredicted RBP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 KRT80Q6KB66 452 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 MSANTD2Q6P1R3 559 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 INTS5Q6P9B9 1019 aaKnown RBP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 ATCAYQ86WG3 371 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 ZZZ3Q8IYH5 903 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 GALNT4Q8N4A0 578 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 AP2M1Q96CW1 435 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 TMX3Q96JJ7 454 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 TMEM74Q96NL1 305 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 RBBP8Q99708 897 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 TRIM15Q9C019 465 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 TNFSF13BQ9Y275 285 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 SERTM2A0A1B0GWG4 89 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 ANKRD34BA5PLL1 514 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 FOXP2O15409 715 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 ECE2O60344 883 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 CYTIPO60759 359 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 GNAI2P04899 355 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 SNRPAP09012 282 aaKnown RBP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 PABPC4LP0CB38 370 aaKnown RBP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 CYP2C9P11712 490 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 CRABP2P29373 138 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 HARS2P49590 506 aaKnown RBP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 SLC9A3R2Q15599 337 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 SEZ6Q53EL9 994 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 VASH1Q7L8A9 365 aaPredicted RBP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 TRPM8Q7Z2W7 1104 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 SIX6OS1Q8N1H7 587 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 METTL4Q8N3J2 472 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 CD209Q9NNX6 404 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 INTS7Q9NVH2 962 aaKnown RBP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 FADS3Q9Y5Q0 445 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 TNRC6AQ8NDV7 1962 aaKnown RBP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 ERCC6Q03468 1493 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 ABHD14A-ACY1A0A1B0GW23 586 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 RAD51CO43502 376 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 JUPP14923 745 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 RXRGP48443 463 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 CEBPGP53567 150 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 COPS2P61201 443 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 HERVK_113P62684 666 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 ERVK-9P63128 1117 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 ERVK-24P63145 666 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 HPCAP84074 193 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 TSTQ16762 297 aaKnown RBP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 ARHGAP24Q8N264 748 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 SEC22CQ9BRL7 303 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 UBA2Q9UBT2 640 aaPredicted RBP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 GTF2IRD1Q9UHL9 959 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 FAM32AQ9Y421 112 aaKnown RBP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 NR2E3Q9Y5X4 410 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 ELP1O95163 1332 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms