RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 HLFQ16534 295 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 ZNF239Q16600 458 aaKnown RBP0.64□□□□□ -2.31
VPS35-212ENST00000640313 ST3GAL2Q16842 350 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 TTC39AQ5SRH9 613 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 TMEM240Q5SV17 173 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 FAM72AQ5TYM5 149 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 SYDE2Q5VT97 1194 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 RNF219Q5W0B1 726 aaPredicted RBP0.64□□□□□ -2.31
VPS35-212ENST00000640313 PLA2G4FQ68DD2 849 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 FAM72DQ6L9T8 149 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 ZNF497Q6ZNH5 498 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 SLC16A12Q6ZSM3 486 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 TRMT1LQ7Z2T5 733 aaKnown RBP0.64□□□□□ -2.31
VPS35-212ENST00000640313 FAM72BQ86X60 149 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 GPSM1Q86YR5 675 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 DDIASQ8IXT1 998 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 CHPFQ8IZ52 775 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 IL17RCQ8NAC3 791 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 PCSK9Q8NBP7 692 aaKnown RBP0.64□□□□□ -2.31
VPS35-212ENST00000640313 LILRB1Q8NHL6 650 aaPredicted RBP0.64□□□□□ -2.31
VPS35-212ENST00000640313 DNAJB14Q8TBM8 379 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 WDR66Q8TBY9 1149 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 TAS1R2Q8TE23 839 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 STAG1Q8WVM7 1258 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 CELF1Q92879 486 aaKnown RBP0.64□□□□□ -2.31
VPS35-212ENST00000640313 GJA10Q969M2 543 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 VPS50Q96JG6 964 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 TEKT5Q96M29 485 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 SENP7Q9BQF6 1050 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 CINPQ9BW66 212 aaPredicted RBP0.64□□□□□ -2.31
VPS35-212ENST00000640313 TTLL2Q9BWV7 592 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 RNF26Q9BY78 433 aaPredicted RBP0.64□□□□□ -2.31
VPS35-212ENST00000640313 BARHL1Q9BZE3 327 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 SLC13A1Q9BZW2 595 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 BRINP2Q9C0B6 783 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 PUS7LQ9H0K6 701 aaKnown RBP0.64□□□□□ -2.31
VPS35-212ENST00000640313 AAMDCQ9H7C9 122 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 ZNF696Q9H7X3 374 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 ERVK-5Q9HDB9 667 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 XPNPEP3Q9NQH7 507 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 VPS45Q9NRW7 570 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 LMBRD1Q9NUN5 540 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 ZSCAN32Q9NX65 697 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 TBC1D14Q9P2M4 693 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 ATP8A1Q9Y2Q0 1164 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 MED16Q9Y2X0 877 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 SBNO2Q9Y2G9 1366 aa0.64□□□□□ -2.31
VPS35-212ENST00000640313 COL5A2P05997 1499 aaPredicted RBP0.64□□□□□ -2.31
VPS35-212ENST00000640313 PRRC2AP48634 2157 aaKnown RBP0.64□□□□□ -2.31
VPS35-212ENST00000640313 IGLV5-52A0A0A0MRZ9 124 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 DPPA5A6NC42 116 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 KRTAP16-1A8MUX0 517 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 PRAC2D3DTV9 90 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 I6L893 689 aaPredicted RBP0.63□□□□□ -2.31
VPS35-212ENST00000640313 TULP2O00295 520 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 VWA5AO00534 786 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 PRYO14603 147 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 CD3EAPO15446 510 aaKnown RBP0.63□□□□□ -2.31
VPS35-212ENST00000640313 XPNPEP2O43895 674 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 ENO1P06733 434 aaKnown RBP0.63□□□□□ -2.31
VPS35-212ENST00000640313 TMIGD3P0DMS9 266 aaPredicted RBP0.63□□□□□ -2.31
VPS35-212ENST00000640313 AKR1A1P14550 325 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 DUSP1P28562 367 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 CNGA1P29973 690 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 TIMP3P35625 211 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 AGFG1P52594 562 aaKnown RBP0.63□□□□□ -2.31
VPS35-212ENST00000640313 ADKP55263 362 aaKnown RBP0.63□□□□□ -2.31
VPS35-212ENST00000640313 SELENOVP59797 346 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 NKX6-1P78426 367 aaPredicted RBP0.63□□□□□ -2.31
VPS35-212ENST00000640313 PHEXP78562 749 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 HDAC1Q13547 482 aaPredicted RBP0.63□□□□□ -2.31
VPS35-212ENST00000640313 BRDTQ58F21 947 aaPredicted RBP0.63□□□□□ -2.31
VPS35-212ENST00000640313 TAF7LQ5H9L4 462 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 FSCBQ5H9T9 825 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 EEF1AKMT2Q5JPI9 291 aaKnown RBP0.63□□□□□ -2.31
VPS35-212ENST00000640313 ZNF484Q5JVG2 852 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 ZC2HC1BQ5TFG8 222 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 DCAF12L2Q5VW00 463 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 LIPMQ5VYY2 423 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 PRR18Q8N4B5 295 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 METTL25Q8N6Q8 603 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 CELF5Q8N6W0 485 aaKnown RBP0.63□□□□□ -2.31
VPS35-212ENST00000640313 DNAJC5GQ8N7S2 189 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 DDX51Q8N8A6 666 aaKnown RBP eCLIP0.63□□□□□ -2.31
VPS35-212ENST00000640313 FAM47BQ8NA70 645 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 ENGASEQ8NFI3 743 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 OR14A16Q8NHC5 309 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 ATL2Q8NHH9 583 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 ZFPM2Q8WW38 1151 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 TMED6Q8WW62 240 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 FAXDC2Q96IV6 333 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 ZBTB45Q96K62 511 aaPredicted RBP0.63□□□□□ -2.31
VPS35-212ENST00000640313 MRGPRX1Q96LB2 322 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 IL17FQ96PD4 163 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 ATOH8Q96SQ7 321 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 HERPUD2Q9BSE4 406 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 MOV10L1Q9BXT6 1211 aaKnown RBP0.63□□□□□ -2.31
VPS35-212ENST00000640313 RTFDC1Q9BY42 306 aaPredicted RBP0.63□□□□□ -2.31
VPS35-212ENST00000640313 UBXN6Q9BZV1 441 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 CCDC8Q9H0W5 538 aaPredicted RBP0.63□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms