RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 AKAP12Q02952 1782 aa5.89□□□□□ -1.47
VPS29-212ENST00000621131 LY6G6EA0A0G2JKS1 128 aa5.89□□□□□ -1.47
VPS29-212ENST00000621131 F8W8V4 182 aa5.89□□□□□ -1.47
VPS29-212ENST00000621131 RNF8O76064 485 aa5.89□□□□□ -1.47
VPS29-212ENST00000621131 ADRA1DP25100 572 aa5.89□□□□□ -1.47
VPS29-212ENST00000621131 COPAP53621 1224 aa5.89□□□□□ -1.47
VPS29-212ENST00000621131 HTRA4P83105 476 aaPredicted RBP5.89□□□□□ -1.47
VPS29-212ENST00000621131 CFHR1Q03591 330 aa5.89□□□□□ -1.47
VPS29-212ENST00000621131 SLC14A1Q13336 389 aa5.89□□□□□ -1.47
VPS29-212ENST00000621131 SEMA5AQ13591 1074 aa5.89□□□□□ -1.47
VPS29-212ENST00000621131 CLCA4Q14CN2 919 aa5.89□□□□□ -1.47
VPS29-212ENST00000621131 MFSD13AQ14CX5 517 aa5.89□□□□□ -1.47
VPS29-212ENST00000621131 TWIST1Q15672 202 aa5.89□□□□□ -1.47
VPS29-212ENST00000621131 ZNF260Q3ZCT1 412 aa5.89□□□□□ -1.47
VPS29-212ENST00000621131 CCDC184Q52MB2 194 aa5.89□□□□□ -1.47
VPS29-212ENST00000621131 CLEC9AQ6UXN8 241 aa5.89□□□□□ -1.47
VPS29-212ENST00000621131 NGDNQ8NEJ9 315 aaKnown RBP5.89□□□□□ -1.47
VPS29-212ENST00000621131 VCPIP1Q96JH7 1222 aa5.89□□□□□ -1.47
VPS29-212ENST00000621131 SNX22Q96L94 193 aa5.89□□□□□ -1.47
VPS29-212ENST00000621131 TMEM184CQ9NVA4 438 aa5.89□□□□□ -1.47
VPS29-212ENST00000621131 PI4KBQ9UBF8 816 aa5.89□□□□□ -1.47
VPS29-212ENST00000621131 G3BP2Q9UN86 482 aaKnown RBP5.89□□□□□ -1.47
VPS29-212ENST00000621131 FRMPD2Q68DX3 1309 aaPredicted RBP5.89□□□□□ -1.47
VPS29-212ENST00000621131 A0A1W2PP64 1363 aa5.89□□□□□ -1.47
VPS29-212ENST00000621131 COL15A1P39059 1388 aa5.89□□□□□ -1.47
VPS29-212ENST00000621131 PLEKHH1Q9ULM0 1364 aa5.89□□□□□ -1.47
VPS29-212ENST00000621131 BLMP54132 1417 aaPredicted RBP5.89□□□□□ -1.47
VPS29-212ENST00000621131 EDC4Q6P2E9 1401 aaKnown RBP5.89□□□□□ -1.47
VPS29-212ENST00000621131 BCL9LQ86UU0 1499 aa5.89□□□□□ -1.47
VPS29-212ENST00000621131 AHDC1Q5TGY3 1603 aaPredicted RBP5.88□□□□□ -1.47
VPS29-212ENST00000621131 MON2Q7Z3U7 1717 aa5.88□□□□□ -1.47
VPS29-212ENST00000621131 GOLGA6CA6NDK9 693 aa5.88□□□□□ -1.47
VPS29-212ENST00000621131 GOLGA6BA6NDN3 693 aa5.88□□□□□ -1.47
VPS29-212ENST00000621131 FYB1O15117 783 aa5.88□□□□□ -1.47
VPS29-212ENST00000621131 TLR2O60603 784 aa5.88□□□□□ -1.47
VPS29-212ENST00000621131 SNX2O60749 519 aa5.88□□□□□ -1.47
VPS29-212ENST00000621131 GOLGA6DP0CG33 693 aa5.88□□□□□ -1.47
VPS29-212ENST00000621131 RPL17P18621 184 aaKnown RBP5.88□□□□□ -1.47
VPS29-212ENST00000621131 EIF4A1P60842 406 aaKnown RBP5.88□□□□□ -1.47
VPS29-212ENST00000621131 ST3GAL2Q16842 350 aa5.88□□□□□ -1.47
VPS29-212ENST00000621131 TRIM71Q2Q1W2 868 aaKnown RBP5.88□□□□□ -1.47
VPS29-212ENST00000621131 GFOD2Q3B7J2 385 aa5.88□□□□□ -1.47
VPS29-212ENST00000621131 MZT2AQ6P582 158 aa5.88□□□□□ -1.47
VPS29-212ENST00000621131 C14orf80Q86SX3 495 aa5.88□□□□□ -1.47
VPS29-212ENST00000621131 SDR16C5Q8N3Y7 309 aa5.88□□□□□ -1.47
VPS29-212ENST00000621131 NGEFQ8N5V2 710 aa5.88□□□□□ -1.47
VPS29-212ENST00000621131 TTC8Q8TAM2 541 aa5.88□□□□□ -1.47
VPS29-212ENST00000621131 IPCEF1Q8WWN9 437 aaPredicted RBP5.88□□□□□ -1.47
VPS29-212ENST00000621131 TSR2Q969E8 191 aaKnown RBP5.88□□□□□ -1.47
VPS29-212ENST00000621131 FAM227BQ96M60 508 aa5.88□□□□□ -1.47
VPS29-212ENST00000621131 STRBPQ96SI9 672 aaKnown RBP5.88□□□□□ -1.47
VPS29-212ENST00000621131 WACQ9BTA9 647 aa5.88□□□□□ -1.47
VPS29-212ENST00000621131 AS3MTQ9HBK9 375 aa5.88□□□□□ -1.47
VPS29-212ENST00000621131 OBP2AQ9NY56 170 aa5.88□□□□□ -1.47
VPS29-212ENST00000621131 GOLGA6AQ9NYA3 693 aa5.88□□□□□ -1.47
VPS29-212ENST00000621131 MAFFQ9ULX9 164 aa5.88□□□□□ -1.47
VPS29-212ENST00000621131 HPSEQ9Y251 543 aa5.88□□□□□ -1.47
VPS29-212ENST00000621131 PTPRUQ92729 1446 aa5.88□□□□□ -1.47
VPS29-212ENST00000621131 CHD2O14647 1828 aaKnown RBP5.88□□□□□ -1.47
VPS29-212ENST00000621131 TRIM38O00635 465 aa5.87□□□□□ -1.47
VPS29-212ENST00000621131 TMEM191BP0C7N4 346 aa5.87□□□□□ -1.47
VPS29-212ENST00000621131 CTSAP10619 480 aa5.87□□□□□ -1.47
VPS29-212ENST00000621131 RHCEP18577 417 aa5.87□□□□□ -1.47
VPS29-212ENST00000621131 YY1P25490 414 aa5.87□□□□□ -1.47
VPS29-212ENST00000621131 HTR7P34969 479 aa5.87□□□□□ -1.47
VPS29-212ENST00000621131 KRTAP10-9P60411 292 aa5.87□□□□□ -1.47
VPS29-212ENST00000621131 RBM6P78332 1123 aaKnown RBP5.87□□□□□ -1.47
VPS29-212ENST00000621131 RHDQ02161 417 aa5.87□□□□□ -1.47
VPS29-212ENST00000621131 ZNF91Q05481 1191 aa5.87□□□□□ -1.47
VPS29-212ENST00000621131 SRSF1Q07955 248 aaKnown RBP eCLIP5.87□□□□□ -1.47
VPS29-212ENST00000621131 GRHL2Q6ISB3 625 aa5.87□□□□□ -1.47
VPS29-212ENST00000621131 UBE2Q1Q7Z7E8 422 aa5.87□□□□□ -1.47
VPS29-212ENST00000621131 VPS50Q96JG6 964 aa5.87□□□□□ -1.47
VPS29-212ENST00000621131 PNNQ9H307 717 aaKnown RBP5.87□□□□□ -1.47
VPS29-212ENST00000621131 USP29Q9HBJ7 922 aa5.87□□□□□ -1.47
VPS29-212ENST00000621131 TBC1D23Q9NUY8 699 aa5.87□□□□□ -1.47
VPS29-212ENST00000621131 ZNF212Q9UDV6 495 aa5.87□□□□□ -1.47
VPS29-212ENST00000621131 NUDCQ9Y266 331 aa5.87□□□□□ -1.47
VPS29-212ENST00000621131 POLR3AO14802 1390 aaPredicted RBP5.87□□□□□ -1.47
VPS29-212ENST00000621131 ANKARQ7Z5J8 1434 aa5.87□□□□□ -1.47
VPS29-212ENST00000621131 FMN2Q9NZ56 1722 aa5.87□□□□□ -1.47
VPS29-212ENST00000621131 SIPA1L2Q9P2F8 1722 aaPredicted RBP5.87□□□□□ -1.47
VPS29-212ENST00000621131 SMG6Q86US8 1419 aaKnown RBP5.86□□□□□ -1.47
VPS29-212ENST00000621131 TMEM94Q12767 1356 aa5.86□□□□□ -1.47
VPS29-212ENST00000621131 ZMYM2Q9UBW7 1377 aa5.86□□□□□ -1.47
VPS29-212ENST00000621131 CA12O43570 354 aa5.86□□□□□ -1.47
VPS29-212ENST00000621131 PRAMEF2O60811 474 aa5.86□□□□□ -1.47
VPS29-212ENST00000621131 CNOT3O75175 753 aaKnown RBP5.86□□□□□ -1.47
VPS29-212ENST00000621131 MBPP02686 304 aaPredicted RBP5.86□□□□□ -1.47
VPS29-212ENST00000621131 RBL1P28749 1068 aa5.86□□□□□ -1.47
VPS29-212ENST00000621131 MTAPQ13126 283 aa5.86□□□□□ -1.47
VPS29-212ENST00000621131 FHL1Q13642 323 aa5.86□□□□□ -1.47
VPS29-212ENST00000621131 ANO7Q6IWH7 933 aa5.86□□□□□ -1.47
VPS29-212ENST00000621131 FAM71DQ8N9W8 422 aa5.86□□□□□ -1.47
VPS29-212ENST00000621131 PRR11Q96HE9 360 aaPredicted RBP5.86□□□□□ -1.47
VPS29-212ENST00000621131 HIC2Q96JB3 615 aa5.86□□□□□ -1.47
VPS29-212ENST00000621131 BRIP1Q9BX63 1249 aa5.86□□□□□ -1.47
VPS29-212ENST00000621131 BTBD1Q9H0C5 482 aa5.86□□□□□ -1.47
VPS29-212ENST00000621131 VPS45Q9NRW7 570 aa5.86□□□□□ -1.47
VPS29-212ENST00000621131 NKTRP30414 1462 aaKnown RBP5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms